|
r-clustifyr
|
1.14.0-1 |
0 |
0.00
|
Classifier for Single-cell RNA-seq Using Cell Clusters |
BioArchLinuxBot
|
2023-10-27 08:10 (UTC) |
|
r-clusterseq
|
1.28.0-1 |
0 |
0.00
|
Clustering of high-throughput sequencing data by identifying co-expression patterns |
BioArchLinuxBot
|
2024-05-02 00:46 (UTC) |
|
r-clusterexperiment
|
2.24.0-1 |
0 |
0.00
|
Compare Clusterings for Single-Cell Sequencing |
BioArchLinuxBot
|
2024-05-03 18:21 (UTC) |
|
r-clonotyper
|
1.34.0-4 |
0 |
0.00
|
High throughput analysis of T cell antigen receptor sequences |
BioArchLinuxBot
|
2022-11-04 06:01 (UTC) |
|
r-cleaver
|
1.42.0-1 |
0 |
0.00
|
Cleavage of Polypeptide Sequences |
BioArchLinuxBot
|
2024-05-02 00:27 (UTC) |
|
r-cleanupdtseq
|
1.42.0-1 |
0 |
0.00
|
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data |
BioArchLinuxBot
|
2024-05-03 03:28 (UTC) |
|
r-citefuse
|
1.16.0-1 |
0 |
0.00
|
CiteFuse: multi-modal analysis of CITE-seq data |
BioArchLinuxBot
|
2024-05-03 01:38 (UTC) |
|
r-chromstardata
|
1.30.0-1 |
0 |
0.00
|
ChIP-seq data for Demonstration Purposes |
BioArchLinuxBot
|
2024-05-04 00:24 (UTC) |
|
r-chromstar
|
1.30.0-1 |
0 |
0.00
|
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data |
BioArchLinuxBot
|
2024-05-02 23:41 (UTC) |
|
r-chipxpress
|
1.48.0-1 |
0 |
0.00
|
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles |
BioArchLinuxBot
|
2024-05-03 02:15 (UTC) |
|
r-chipsim
|
1.58.0-1 |
0 |
0.00
|
Simulation of ChIP-seq experiments |
BioArchLinuxBot
|
2024-05-03 01:28 (UTC) |
|
r-chipseqr
|
1.58.0-1 |
0 |
0.00
|
Identifying Protein Binding Sites in High-Throughput Sequencing Data |
BioArchLinuxBot
|
2024-05-03 01:27 (UTC) |
|
r-chipseq
|
1.54.0-1 |
0 |
0.00
|
chipseq: A package for analyzing chipseq data |
BioArchLinuxBot
|
2024-05-03 01:22 (UTC) |
|
r-chipqc
|
1.40.0-1 |
0 |
0.00
|
Quality metrics for ChIPseq data |
BioArchLinuxBot
|
2024-05-03 09:33 (UTC) |
|
r-chippeakanno
|
3.38.0-1 |
0 |
0.00
|
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data |
BioArchLinuxBot
|
2024-05-03 12:06 (UTC) |
|
r-chipenrich
|
2.28.0-1 |
0 |
0.00
|
Gene Set Enrichment For ChIP-seq Peak Data |
BioArchLinuxBot
|
2024-05-03 18:26 (UTC) |
|
r-chipcomp
|
1.34.0-1 |
0 |
0.00
|
Quantitative comparison of multiple ChIP-seq datasets |
BioArchLinuxBot
|
2024-05-03 03:27 (UTC) |
|
r-chic
|
1.19.0-3 |
0 |
0.00
|
Quality Control Pipeline for ChIP-Seq Data |
BioArchLinuxBot
|
2023-10-28 15:09 (UTC) |
|
r-chetah
|
1.20.0-1 |
0 |
0.00
|
Fast and accurate scRNA-seq cell type identification |
BioArchLinuxBot
|
2024-05-02 21:54 (UTC) |
|
r-cfdnapro
|
1.10.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2024-05-03 03:33 (UTC) |
|
r-cfdnakit
|
1.2.0-1 |
0 |
0.00
|
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA) |
pekkarr
|
2024-05-02 21:16 (UTC) |
|
r-celltree
|
1.27.0-4 |
0 |
0.00
|
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure |
BioArchLinuxBot
|
2023-04-29 05:11 (UTC) |
|
r-cellity
|
1.32.0-1 |
0 |
0.00
|
Quality Control for Single-Cell RNA-seq Data |
BioArchLinuxBot
|
2024-05-02 23:26 (UTC) |
|
r-cellarepertorium
|
1.12.0-1 |
0 |
0.00
|
Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq) |
BioArchLinuxBot
|
2023-10-26 02:47 (UTC) |
|
r-celaref
|
1.22.0-1 |
0 |
0.00
|
Single-cell RNAseq cell cluster labelling by reference |
BioArchLinuxBot
|
2024-05-03 00:15 (UTC) |
|
r-ccimpute
|
1.6.0-1 |
0 |
0.00
|
an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data |
pekkarr
|
2024-05-02 05:22 (UTC) |
|
r-cager
|
2.10.0-1 |
0 |
0.00
|
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining |
BioArchLinuxBot
|
2024-05-03 06:36 (UTC) |
|
r-caen
|
1.12.0-1 |
0 |
0.00
|
Category encoding method for selecting feature genes for the classification of single-cell RNA-seq |
BioArchLinuxBot
|
2024-05-02 19:31 (UTC) |
|
r-busseq
|
1.10.0-1 |
0 |
0.00
|
Batch Effect Correction with Unknow Subtypes for scRNA-seq data |
BioArchLinuxBot
|
2024-05-02 21:34 (UTC) |
|
r-bubbletree
|
2.34.0-1 |
0 |
0.00
|
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data |
BioArchLinuxBot
|
2024-05-03 05:42 (UTC) |
|
r-bsseq
|
1.40.0-1 |
0 |
0.00
|
Analyze, manage and store bisulfite sequencing data |
BioArchLinuxBot
|
2024-05-03 02:57 (UTC) |
|
r-bsgenome.mmusculus.ucsc.mm9
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Mus musculus (UCSC version mm9) |
BioArchLinuxBot
|
2022-06-05 21:29 (UTC) |
|
r-bsgenome.mmusculus.ucsc.mm10
|
1.4.3-4 |
0 |
0.00
|
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6) |
BioArchLinuxBot
|
2022-06-05 21:29 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg38
|
1.4.5-3 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13) |
BioArchLinuxBot
|
2023-02-09 18:25 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg19
|
1.4.3-4 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13) |
BioArchLinuxBot
|
2022-06-05 21:28 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg18
|
1.3.1000-4 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg18) |
BioArchLinuxBot
|
2022-06-05 21:28 (UTC) |
|
r-bsgenome.hsapiens.ncbi.grch38
|
1.3.1000-3 |
0 |
0.00
|
Full genome sequences for Homo sapiens (GRCh38) |
peippo
|
2023-07-03 12:12 (UTC) |
|
r-bsgenome.hsapiens.1000genomes.hs37d5
|
0.99.1-3 |
0 |
0.00
|
1000genomes Reference Genome Sequence (hs37d5) |
pekkarr
|
2024-04-27 20:08 (UTC) |
|
r-bsgenome.drerio.ucsc.danrer7
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Danio rerio (UCSC version danRer7) |
BioArchLinuxBot
|
2022-06-05 21:27 (UTC) |
|
r-bsgenome.celegans.ucsc.ce2
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Caenorhabditis elegans (UCSC version ce2) |
BioArchLinuxBot
|
2022-06-05 21:27 (UTC) |
|
r-breakpointrdata
|
1.22.0-1 |
0 |
0.00
|
Strand-seq data for demonstration purposes |
BioArchLinuxBot
|
2024-05-04 00:19 (UTC) |
|
r-breakpointr
|
1.22.0-1 |
0 |
0.00
|
Find breakpoints in Strand-seq data |
BioArchLinuxBot
|
2024-05-02 23:42 (UTC) |
|
r-brainflowprobes
|
1.16.0-1 |
0 |
0.00
|
Plots and annotation for choosing BrainFlow target probe sequence |
BioArchLinuxBot
|
2023-10-27 15:50 (UTC) |
|
r-borealis
|
1.8.0-1 |
0 |
0.00
|
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution |
pekkarr
|
2024-05-03 05:37 (UTC) |
|
r-biseq
|
1.44.0-1 |
0 |
0.00
|
Processing and analyzing bisulfite sequencing data |
BioArchLinuxBot
|
2024-05-03 12:30 (UTC) |
|
r-bgeecall
|
1.18.1-1 |
0 |
0.00
|
Automatic RNA-Seq present/absent gene expression calls generation |
BioArchLinuxBot
|
2023-11-02 00:35 (UTC) |
|
r-beat
|
1.42.0-1 |
0 |
0.00
|
BEAT - BS-Seq Epimutation Analysis Toolkit |
BioArchLinuxBot
|
2024-05-03 03:07 (UTC) |
|
r-bcseq
|
1.26.0-1 |
0 |
0.00
|
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens |
BioArchLinuxBot
|
2024-05-02 18:34 (UTC) |
|
r-bcrank
|
1.66.0-1 |
0 |
0.00
|
Predicting binding site consensus from ranked DNA sequences |
BioArchLinuxBot
|
2024-05-02 00:08 (UTC) |
|
r-bayseq
|
2.38.0-1 |
0 |
0.00
|
Empirical Bayesian analysis of patterns of differential expression in count data |
BioArchLinuxBot
|
2024-05-01 22:05 (UTC) |