samtools
|
1.20-1 |
31 |
0.87
|
tools for manipulating next-generation sequencing data |
r6eve
|
2024-04-15 22:56 (UTC) |
htslib
|
1.20-1 |
19 |
0.00
|
A C library for high-throughput sequencing data formats |
meanjollies
|
2024-04-15 18:29 (UTC) |
bowtie2
|
2.5.3-1 |
16 |
0.00
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. |
vejnar
|
2024-03-16 15:40 (UTC) |
picard-tools
|
3.1.1-1 |
8 |
0.00
|
set of tools for working with next generation sequencing data in the BAM format |
malacology
|
2023-11-15 00:03 (UTC) |
hisat2
|
2.2.1-1 |
3 |
0.87
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
readknead
|
0.1.2-1 |
1 |
0.00
|
Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads |
vejnar
|
2022-11-22 20:53 (UTC) |
musket
|
1.1-2 |
1 |
0.00
|
a parallel short-read error corrector for Illumina sequencing |
kleintux
|
2022-01-22 20:15 (UTC) |
mosdepth
|
0.3.4-1 |
1 |
0.00
|
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing |
meanjollies
|
2023-06-26 02:57 (UTC) |
htscodecs
|
1.6.0-1 |
1 |
0.00
|
Custom compression for sequencing formats, e.g. CRAM |
mschu
|
2023-12-07 16:37 (UTC) |
gatk-bin
|
4.5.0.0-1 |
1 |
0.00
|
Variant discovery in high-throughput bioinformatics sequencing data |
46620
|
2023-12-14 18:57 (UTC) |
flexbar
|
3.5.0-1 |
1 |
0.00
|
flexible barcode and adapter removal for sequencing platforms |
kleintux
|
2021-09-17 10:33 (UTC) |
cutepeaks-git
|
0.2.3-1 |
1 |
0.00
|
A simple viewer for Sanger sequencing files |
Direct-A
|
2021-08-23 03:37 (UTC) |
bcalm-git
|
2.2.0.r49.g890ea4a-1 |
1 |
0.00
|
constructs compacted de Bruijn graph from sequencing data |
Piezo
|
2019-12-01 14:50 (UTC) |
sniffles
|
1.0.12-1 |
0 |
0.00
|
Structural variation caller using third generation sequencing |
orphan
|
2021-12-13 23:16 (UTC) |
samtools-git
|
1.17.r8.gc75edb00-1 |
0 |
0.00
|
Tools for manipulating next-generation sequencing data |
Chocobo1
|
2023-04-13 08:33 (UTC) |
rnalysis
|
3.11-1 |
0 |
0.00
|
Python-based software for analyzing RNA sequencing data. https://doi.org/10.1101/2022.11.25.517851 |
kbipinkumar
|
2024-01-05 18:04 (UTC) |
r-tress
|
1.10.0-1 |
0 |
0.00
|
Toolbox for mRNA epigenetics sequencing analysis |
BioArchLinuxBot
|
2024-05-03 02:42 (UTC) |
r-tradeseq
|
1.18.0-1 |
0 |
0.00
|
trajectory-based differential expression analysis for sequencing data |
BioArchLinuxBot
|
2024-05-03 08:30 (UTC) |
r-titancna
|
1.42.0-1 |
0 |
0.00
|
Subclonal copy number and LOH prediction from whole genome sequencing of tumours |
BioArchLinuxBot
|
2024-05-03 08:09 (UTC) |
r-tcseq
|
1.28.0-1 |
0 |
0.00
|
Time course sequencing data analysis |
BioArchLinuxBot
|
2024-05-03 07:46 (UTC) |
r-subseq
|
1.34.0-1 |
0 |
0.00
|
Subsampling of high-throughput sequencing count data |
BioArchLinuxBot
|
2024-05-03 07:40 (UTC) |
r-spsimseq
|
1.14.0-1 |
0 |
0.00
|
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-03 08:47 (UTC) |
r-splatter
|
1.28.0-1 |
0 |
0.00
|
Simple Simulation of Single-cell RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-03 07:48 (UTC) |
r-somnibus
|
1.12.0-1 |
0 |
0.00
|
Smooth modeling of bisulfite sequencing |
BioArchLinuxBot
|
2024-05-03 05:31 (UTC) |
r-slingshot
|
2.12.0-1 |
0 |
0.00
|
Tools for ordering single-cell sequencing |
BioArchLinuxBot
|
2024-05-03 00:14 (UTC) |
r-seqsqc
|
1.26.0-1 |
0 |
0.00
|
A bioconductor package for sample quality check with next generation sequencing data |
BioArchLinuxBot
|
2024-05-02 20:42 (UTC) |
r-seqsetvis
|
1.24.0-1 |
0 |
0.00
|
Set Based Visualizations for Next-Gen Sequencing Data |
BioArchLinuxBot
|
2024-05-03 01:06 (UTC) |
r-seqcna.annot
|
1.38.0-2 |
0 |
0.00
|
Annotation for the copy number analysis of deep sequencing cancer data with seqCNA |
BioArchLinuxBot
|
2024-03-15 14:10 (UTC) |
r-seqcna
|
1.48.0-1 |
0 |
0.00
|
Copy number analysis of high-throughput sequencing cancer data |
BioArchLinuxBot
|
2023-10-25 22:08 (UTC) |
r-seqcat
|
1.26.0-1 |
0 |
0.00
|
High Throughput Sequencing Cell Authentication Toolkit |
BioArchLinuxBot
|
2024-05-03 04:49 (UTC) |
r-seqbias
|
1.50.0-1 |
0 |
0.00
|
Estimation of per-position bias in high-throughput sequencing data |
BioArchLinuxBot
|
2023-10-26 02:57 (UTC) |
r-seq2pathway
|
1.36.0-1 |
0 |
0.00
|
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data |
BioArchLinuxBot
|
2024-05-02 23:16 (UTC) |
r-seq.hotspot
|
1.4.0-1 |
0 |
0.00
|
Targeted sequencing panel design based on mutation hotspots |
pekkarr
|
2024-05-02 04:48 (UTC) |
r-segmentseq
|
2.38.0-1 |
0 |
0.00
|
Methods for identifying small RNA loci from high-throughput sequencing data |
BioArchLinuxBot
|
2024-05-03 01:26 (UTC) |
r-sdams
|
1.24.0-1 |
0 |
0.00
|
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data |
BioArchLinuxBot
|
2024-05-02 19:09 (UTC) |
r-scthi
|
1.16.0-1 |
0 |
0.00
|
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-01 19:49 (UTC) |
r-scshapes
|
1.10.0-1 |
0 |
0.00
|
A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data |
BioArchLinuxBot
|
2024-05-01 19:50 (UTC) |
r-screencounter
|
1.4.0-1 |
0 |
0.00
|
Counting Reads in High-Throughput Sequencing Screens |
pekkarr
|
2024-05-02 20:05 (UTC) |
r-scope
|
1.16.0-1 |
0 |
0.00
|
A normalization and copy number estimation method for single-cell DNA sequencing |
BioArchLinuxBot
|
2024-05-03 03:23 (UTC) |
r-scds
|
1.20.0-1 |
0 |
0.00
|
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-02 21:36 (UTC) |
r-scclassifr
|
1.2.0-3 |
0 |
0.00
|
Pretrained learning models for cell type prediction on single cell RNA-sequencing data |
BioArchLinuxBot
|
2022-06-07 13:21 (UTC) |
r-sccb2
|
1.14.0-1 |
0 |
0.00
|
CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-03 01:56 (UTC) |
r-scannotatr
|
1.10.0-1 |
0 |
0.00
|
Pretrained learning models for cell type prediction on single cell RNA-sequencing data |
BioArchLinuxBot
|
2024-05-02 23:57 (UTC) |
r-saturn
|
1.12.0-1 |
0 |
0.00
|
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications |
BioArchLinuxBot
|
2024-05-02 19:39 (UTC) |
r-sangerseqr
|
1.40.0-1 |
0 |
0.00
|
Tools for Sanger Sequencing Data in R |
BioArchLinuxBot
|
2024-05-03 18:09 (UTC) |
r-rsubread
|
2.18.0-1 |
0 |
0.00
|
Mapping, quantification and variant analysis of sequencing data |
BioArchLinuxBot
|
2024-05-02 03:20 (UTC) |
r-rqc
|
1.38.0-1 |
0 |
0.00
|
Quality Control Tool for High-Throughput Sequencing Data |
BioArchLinuxBot
|
2024-05-03 05:47 (UTC) |
r-rnaseqcovarimpute
|
1.2.0-1 |
0 |
0.00
|
Impute Covariate Data in RNA Sequencing Studies |
pekkarr
|
2024-05-10 12:04 (UTC) |
r-rnamodr
|
1.18.0-1 |
0 |
0.00
|
Detection of post-transcriptional modifications in high throughput sequencing data |
BioArchLinuxBot
|
2024-05-04 18:36 (UTC) |