python-pybedtools
|
0.10.0-1 |
0 |
0.00
|
python wrapper for BEDTools bioinformatics suite |
kbipinkumar
|
2024-04-10 00:02 (UTC) |
python-pairwisedist
|
1.3.1-3 |
0 |
0.00
|
Calculate the pairwise-distance matrix for an array of n samples by p features |
kbipinkumar
|
2024-04-27 12:06 (UTC) |
python-ngs
|
3.1.1-1 |
0 |
0.00
|
python module for NCBI NGS Language Bindings |
kbipinkumar
|
2024-05-22 06:01 (UTC) |
python-ncls
|
0.0.68-2 |
0 |
0.00
|
A wrapper for the nested containment list data structure. http://dx.doi.org/10.1093/bioinformatics/btz615 |
kbipinkumar
|
2023-05-19 18:01 (UTC) |
python-mappy
|
2.28-1 |
0 |
0.00
|
Python interface to minimap2, a fast and accurate C program to align genomic and transcribe nucleotide sequences |
kbipinkumar
|
2024-03-27 18:10 (UTC) |
python-isal
|
1.6.1-1 |
0 |
0.00
|
Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library |
kbipinkumar
|
2024-03-11 18:09 (UTC) |
python-grid-strategy
|
0.0.1-6 |
0 |
0.00
|
Organize matplotlib plots using different grid strategies |
kbipinkumar
|
2024-04-27 12:07 (UTC) |
python-dnaio
|
1.2.1-1 |
0 |
0.00
|
Python library for very efficient parsing and writing of FASTQ and FASTA files |
kbipinkumar
|
2024-06-17 00:02 (UTC) |
pyabpoa
|
1.5.1-1 |
0 |
0.00
|
python bindings for abpoa |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
perl-file-share
|
0.27-1 |
0 |
0.00
|
Extend File::ShareDir to Local Libraries |
kbipinkumar
|
2022-12-05 14:33 (UTC) |
parafly
|
0.1.0-1 |
0 |
0.00
|
parallel command processing using OpenMP |
kbipinkumar
|
2023-04-23 09:48 (UTC) |
outils
|
0.13-1 |
1 |
0.65
|
A port of some non-standard OpenBSD tools to Linux |
kbipinkumar
|
2023-10-20 18:03 (UTC) |
oligoarrayaux
|
3.8.1-1 |
0 |
0.00
|
A subset of the UNAFold package for use with OligoArray |
kbipinkumar
|
2023-03-07 04:34 (UTC) |
nthash-bcgsc
|
2.3.0-3 |
0 |
0.00
|
Fast hash function for DNA/RNA sequences. https://doi.org/10.1093/bioinformatics/btac564 |
kbipinkumar
|
2023-11-09 00:01 (UTC) |
nanostat
|
1.6.0-1 |
0 |
0.00
|
Create statistic summary of an Oxford Nanopore read dataset |
kbipinkumar
|
2023-08-05 09:06 (UTC) |
nanoqc
|
0.9.4-1 |
0 |
0.00
|
Create fastQC-like plots for Oxford Nanopore sequencing data |
kbipinkumar
|
2023-08-06 05:29 (UTC) |
nanomath
|
1.4.0-1 |
0 |
0.00
|
simple math function for other Oxford Nanopore processing scripts |
kbipinkumar
|
2024-06-15 00:01 (UTC) |
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
mutmap
|
2.3.4-1 |
0 |
0.00
|
Pipeline to identify causative mutations responsible for a phenotype. https://doi.org/10.7717/peerj.13170 |
kbipinkumar
|
2023-09-13 00:02 (UTC) |
mmseqs2-sse4
|
15.6f452-2 |
0 |
0.00
|
ultra fast and sensitive search and clustering suite optimised for SSE4 instructions. https://doi.org/10.1038/nbt.3988 |
kbipinkumar
|
2023-11-14 06:10 (UTC) |
mmseqs2-avx2
|
15.6f452-2 |
0 |
0.00
|
ultra fast and sensitive search and clustering suite optimised for AVX2 instructions. https://doi.org/10.1038/nbt.3988 |
kbipinkumar
|
2023-11-14 06:10 (UTC) |
mhap
|
2.1.3-2 |
0 |
0.00
|
A locality-sensitive hashing to detect long-read overlaps. https://doi.org/10.1038/nbt.3238 |
kbipinkumar
|
2023-06-23 18:02 (UTC) |
mashmap
|
3.1.3-1 |
0 |
0.00
|
Fast approximate aligner for long DNA sequences |
kbipinkumar
|
2024-01-04 18:02 (UTC) |
lollipops
|
1.7.1-1 |
0 |
0.00
|
Lollipop-style mutation diagrams for annotating genetic variations. https://doi.org/10.1371/journal.pone.0160519 |
kbipinkumar
|
2023-10-05 06:01 (UTC) |
libxtend
|
0.2.0-1 |
0 |
0.00
|
A library of miscellaneous generic C functions |
kbipinkumar
|
2023-10-23 18:03 (UTC) |
kraken2
|
2.1.3-1 |
0 |
0.00
|
Improved vesion of kraken ultrafast metagenomic sequence classification tool. https://doi.org/10.1186/s13059-019-1891-0 |
kbipinkumar
|
2023-06-07 12:01 (UTC) |
hifiasm
|
0.19.9-1 |
0 |
0.00
|
Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5 |
kbipinkumar
|
2024-05-06 18:04 (UTC) |
gri
|
1:2.12.27-2 |
2 |
0.00
|
A script-based language for scientific graphics programming |
kbipinkumar
|
2024-04-16 07:56 (UTC) |
generand
|
0.1.2-3 |
0 |
0.00
|
Simple and fast tool for generating random genomic data in common formats for testing and benchmarking purposes |
kbipinkumar
|
2023-06-11 15:16 (UTC) |
flair
|
2.0.0-1 |
0 |
0.00
|
Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads |
kbipinkumar
|
2023-06-14 00:01 (UTC) |
fastq-trim
|
0.1.3-1 |
0 |
0.00
|
Lightening fast read trimmer |
kbipinkumar
|
2023-10-24 18:03 (UTC) |
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
fastahack
|
1.0.0-3 |
0 |
0.00
|
utilities for indexing and sequence extraction from FASTA files |
kbipinkumar
|
2023-06-02 00:01 (UTC) |
fasda
|
0.1.5-1 |
0 |
0.00
|
Fast And Simple Differential Analysis of transcriptomic data |
kbipinkumar
|
2023-10-24 18:02 (UTC) |
estscan-doc
|
3.0.3-2 |
0 |
0.00
|
Documentation for estscan |
kbipinkumar
|
2023-04-15 18:01 (UTC) |
estscan
|
3.0.3-2 |
0 |
0.00
|
ORF-independent detector of coding DNA sequences |
kbipinkumar
|
2023-04-15 18:01 (UTC) |
cutadapt
|
4.9-1 |
0 |
0.00
|
Remove adapter sequences from high-throughput sequencing reads. doi:10.14806/ej.17.1.200 |
kbipinkumar
|
2024-06-20 00:04 (UTC) |
cramino
|
0.14.5-1 |
0 |
0.00
|
A fast tool for BAM/CRAM quality evaluation of long reads. https://doi.org/10.1093/bioinformatics/btad311 |
kbipinkumar
|
2024-02-27 18:06 (UTC) |
codonw
|
1.4.4-2 |
0 |
0.00
|
Multivariate analysis (correspondence analysis) of codon and amino acid usage |
kbipinkumar
|
2023-04-02 06:01 (UTC) |
chopper
|
0.8.0-1 |
0 |
0.00
|
Rust implementation of NanoFilt+NanoLyse intended for long read sequencing |
kbipinkumar
|
2024-04-20 00:02 (UTC) |
centrifuge
|
1.0.4.1-1 |
1 |
0.00
|
Rapid and memory-efficient tool for classification of metagenomic sequences |
kbipinkumar
|
2024-02-01 18:02 (UTC) |
cdbfasta-git
|
r4.014498c-1 |
0 |
0.00
|
CDB (Constant DataBase) indexing and retrieval tools for FASTA files |
kbipinkumar
|
2022-11-30 13:08 (UTC) |
bustools
|
0.43.2-1 |
0 |
0.00
|
Program for manipulating BUS files for single cell RNA-Seq datasets. doi:10.1038/s41587-021-00870-2 |
kbipinkumar
|
2024-01-04 12:09 (UTC) |
bracken
|
2.9-1 |
0 |
0.00
|
Bayesian Reestimation of Abundance with KrakEN. https://doi.org/10.7717/peerj-cs.104 |
kbipinkumar
|
2023-09-21 00:02 (UTC) |
biolibc
|
0.2.6-1 |
0 |
0.00
|
High-performance, memory-efficient bioinformatics library |
kbipinkumar
|
2023-10-23 18:04 (UTC) |
augustus
|
3.5.0-5 |
0 |
0.00
|
A eukaryotic gene prediction program |
kbipinkumar
|
2023-06-11 18:09 (UTC) |
any2fasta
|
0.4.2-1 |
0 |
0.00
|
convert various sequence formats to FASTA |
kbipinkumar
|
2023-05-08 13:57 (UTC) |
amrfinderplus
|
3.12.8-2 |
0 |
0.00
|
Identify Antimicrobial resistance genes in assembled bacterial nucleotide and protein sequence. https://doi.org/10.1038/s41598-021-91456-0 |
kbipinkumar
|
2024-03-03 18:02 (UTC) |
allelecount
|
4.3.0-1 |
0 |
0.00
|
program for estimating the NGS copy number |
kbipinkumar
|
2023-05-09 09:51 (UTC) |
alevin-fry
|
0.9.0-1 |
0 |
0.00
|
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data |
kbipinkumar
|
2024-03-09 00:03 (UTC) |