Arch Linux User Repository

@hottea cheers, thanks for the fast response and fix

@liamtimms We need to build it with Slicer_USE_SYSTEM_DCMTK=OFF. You could install it from Archlinuxcn repo if you don't wanna build it from the source.

Hitting a new issue:

/home/liam/.cache/paru/clone/3dslicer/src/build/CTK/Libs/DICOM/Core/ctkDICOMDatabase.cpp: In member function ‘bool ctkDICOMDatabasePrivate::storeThumbnailFile(const QString&, const QString&, const QString&, const QString&)’:
/home/liam/.cache/paru/clone/3dslicer/src/build/CTK/Libs/DICOM/Core/ctkDICOMDatabase.cpp:828:74: error: no matching function for call to ‘DicomImage::DicomImage(QByteArray)’
  828 |   DicomImage dcmImage(QDir::toNativeSeparators(originalFilePath).toUtf8());
      |                                                                          ^
In file included from /home/liam/.cache/paru/clone/3dslicer/src/build/CTK/Libs/DICOM/Core/ctkDICOMDatabase.cpp:52:
/usr/include/dcmtk/dcmimgle/dcmimage.h:1905:5: note: candidate: ‘DicomImage::DicomImage(const DicomImage&)’
 1905 |     DicomImage(const DicomImage &);
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:1905:16: note:   no known conversion for argument 1 from ‘QByteArray’ to ‘const DicomImage&’
 1905 |     DicomImage(const DicomImage &);
      |                ^~~~~~~~~~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:1859:5: note: candidate: ‘DicomImage::DicomImage(const DicomImage*, DiImage*, EP_Interpretation)’
 1859 |     DicomImage(const DicomImage *dicom,
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:1859:5: note:   candidate expects 3 arguments, 1 provided
/usr/include/dcmtk/dcmimgle/dcmimage.h:140:5: note: candidate: ‘DicomImage::DicomImage(DcmObject*, E_TransferSyntax, const DcmUnsignedShort&, const DcmUnsignedShort&, const DcmLongString*, long unsigned int, long unsigned int, long unsigned int)’
  140 |     DicomImage(DcmObject *object,
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:140:5: note:   candidate expects 8 arguments, 1 provided
/usr/include/dcmtk/dcmimgle/dcmimage.h:114:5: note: candidate: ‘DicomImage::DicomImage(DcmObject*, E_TransferSyntax, double, double, long unsigned int, long unsigned int, long unsigned int)’
  114 |     DicomImage(DcmObject *object,
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:114:5: note:   candidate expects 7 arguments, 1 provided
/usr/include/dcmtk/dcmimgle/dcmimage.h:91:5: note: candidate: ‘DicomImage::DicomImage(DcmObject*, E_TransferSyntax, long unsigned int, long unsigned int, long unsigned int)’
   91 |     DicomImage(DcmObject *object,
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:91:5: note:   candidate expects 5 arguments, 1 provided
/usr/include/dcmtk/dcmimgle/dcmimage.h:72:5: note: candidate: ‘DicomImage::DicomImage(const OFFilename&, long unsigned int, long unsigned int, long unsigned int)’
   72 |     DicomImage(const OFFilename &filename,
      |     ^~~~~~~~~~
/usr/include/dcmtk/dcmimgle/dcmimage.h:72:34: note:   no known conversion for argument 1 from ‘QByteArray’ to ‘const OFFilename&’
   72 |     DicomImage(const OFFilename &filename,
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~
make[8]: *** [Libs/DICOM/Core/CMakeFiles/CTKDICOMCore.dir/build.make:148: Libs/DICOM/Core/CMakeFiles/CTKDICOMCore.dir/ctkDICOMDatabase.cpp.o] Error 1
make[7]: *** [CMakeFiles/Makefile2:795: Libs/DICOM/Core/CMakeFiles/CTKDICOMCore.dir/all] Error 2
make[6]: *** [Makefile:136: all] Error 2
make[5]: *** [CMakeFiles/CTK.dir/build.make:87: CTK-prefix/src/CTK-stamp/CTK-build] Error 2
make[4]: *** [CMakeFiles/Makefile2:266: CMakeFiles/CTK.dir/all] Error 2
make[3]: *** [Makefile:136: all] Error 2
make[2]: *** [CMakeFiles/CTK.dir/build.make:90: CTK-prefix/src/CTK-stamp/CTK-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:1050: CMakeFiles/CTK.dir/all] Error 2
make: *** [Makefile:91: all] Error 2

@bartus Yes, I think you're right. dcmtk needs to be compiled with gcc12 too. dcmtk is build with gcc 12 when I build 3dslicer at that time (gcc 13 is not in official repo yet), so I did not encounter this issue. You could rebuild dcmtk with gcc12, and this issue would be fixed.

Got missing symbol error while linking dcmtk:libofstd.so

[ 92%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkTreeComboBoxPlugin.cpp.o
[ 92%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkSearchBoxPlugin.cpp.o
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkSettingsPanelPlugin.cpp.o
/usr/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/12.3.0/../../../../lib/libofstd.so: undefined reference to `std::ios_base_library_init()@GLIBCXX_3.4.32'
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkSettingsDialogPlugin.cpp.o
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkSliderWidgetPlugin.cpp.o
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkWorkflowButtonBoxWidgetPlugin.cpp.o
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/moc_ctkWorkflowWidgetStepPlugin.cpp.o
[ 93%] Building CXX object Libs/Widgets/Plugins/CMakeFiles/CTKWidgetsPlugins.dir/qrc_ctkWidgetsPlugins.cpp.o
collect2: error: ld returned 1 exit status
make[8]: *** [Applications/ctkDICOM/CMakeFiles/ctkDICOM.dir/build.make:108: bin/ctkDICOM] Error 1
make[7]: *** [CMakeFiles/Makefile2:1195: Applications/ctkDICOM/CMakeFiles/ctkDICOM.dir/all] Error 2
make[7]: *** Waiting for unfinished jobs....

Should dcmtk be compiled with gcc-12 or is this a missing -lstdc++ flag in cmake?

$nm -CD /usr/lib/libstdc++.so.6|grep ios_base_library                                                                                                                                   
00000000000c2460 T std::ios_base_library_init()@@GLIBCXX_3.4.32
$pacown /usr/lib/libstdc++.so.6                                                                                                                                                         
/usr/lib/libstdc++.so.6 is owned by gcc-libs 13.1.1-2

@viper2642 Your build log is not enough for debugging.

I get the following build error:

[ 13%] Built target CommonCore-objects
[ 13%] Linking C shared library ../../../../lib/libvtkhdf5-9.1.so
[ 13%] Built target vtkhdf5_src
make[3]: *** [Makefile:136: all] Error 2
make[2]: *** [CMakeFiles/VTK.dir/build.make:91: VTK-prefix/src/VTK-stamp/VTK-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:726: CMakeFiles/VTK.dir/all] Error 2
make: *** [Makefile:91: all] Error 2
make: Leaving directory '/home/dpfeffer/.cache/yay/3dslicer/src/build'
==> ERROR: A failure occurred in build().
Aborting...
 -> error making: 3dslicer-exit status 4
 -> Failed to install the following packages. Manual intervention is 
required:
3dslicer - exit status 4

@maverick1 I found one of the cmake build scripts expects the source to be in a git repo to set Slicer_WC_LAST_CHANGED_DATE. When using the release tarball I had to git init && git add . && git commit -m "dummy" in the extracted source dir to get it to build.

Directly download the tarball from the assets rather than using git to fetch it. The link to the source coder for the version 5.2.2 is https://github.com/Slicer/Slicer/archive/refs/tags/v5.2.2.tar.gz

@hottea not sure what happen left it to build for a good 30mins + but system rebooted it might be related to system libffi. Not a software I would often use so just running the prebuilt package from official site, I just would've liked it to be installed on AUR. Might give it another go in future updates. :(