Package Details: avogadrolibs-git 1.93.0.r1935.926573b1-2

Git Clone URL: https://aur.archlinux.org/avogadrolibs-git.git (read-only, click to copy)
Package Base: avogadrolibs-git
Description: Avogadro 2: libraries
Upstream URL: http://openchemistry.org/projects/avogadro2
Licenses: Kitware
Conflicts: avogadrolibs
Provides: avogadrolibs
Submitter: berquist
Maintainer: berquist
Last Packager: berquist
Votes: 2
Popularity: 0.000000
First Submitted: 2015-07-24 13:28
Last Updated: 2021-01-02 01:33

Latest Comments

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berquist commented on 2020-09-06 00:41

Thanks!

bel commented on 2020-09-03 17:49

I got the following errors while makepkg -si:

[  6%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o
/home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp: In member function ‘bool Avogadro::Io::Hdf5DataFormat::datasetExists(const string&) const’:
/home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp:270:70: error: too few arguments to function ‘herr_t H5Oget_info_by_name3(hid_t, const char*, H5O_info2_t*, unsigned int, hid_t)’
  270 |   if (H5Oget_info_by_name(d->fileId, path.c_str(), &info, H5P_DEFAULT) < 0)
      |                                                                      ^
In file included from /usr/include/H5Apublic.h:22,
                 from /usr/include/hdf5.h:23,
                 from /home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp:19:
/usr/include/H5Opublic.h:188:15: note: declared here
  188 | H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo,
      |               ^~~~~~~~~~~~~~~~~~~~
/home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp: In member function ‘std::vector<std::__cxx11::basic_string<char> > Avogadro::Io::Hdf5DataFormat::datasets() const’:
/home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp:507:54: error: too few arguments to function ‘herr_t H5Ovisit3(hid_t, H5_index_t, H5_iter_order_t, H5O_iterate2_t, void*, unsigned int)’
  507 |                          &visitor.operation, &visitor);
      |                                                      ^
In file included from /usr/include/H5Apublic.h:22,
                 from /usr/include/hdf5.h:23,
                 from /home/belen/apps/aur/avogadrolibs-git/src/avogadrolibs/avogadro/io/hdf5dataformat.cpp:19:
/usr/include/H5Opublic.h:211:15: note: declared here
  211 | H5_DLL herr_t H5Ovisit3(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order,
      |               ^~~~~~~~~
make[2]: *** [avogadro/io/CMakeFiles/AvogadroIO.dir/build.make:238: avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:2646: avogadro/io/CMakeFiles/AvogadroIO.dir/all] Error 2
make: *** [Makefile:160: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...

a.kudelin commented on 2019-05-15 14:28

@berquist Done already, they didn't respond. I just suggested a workaround to disable such instructions as AVX/AVX2 to prevent crashes.

berquist commented on 2019-05-15 03:00

unset CFLAGS and CXXFLAGS which cause the Eigen3 crash when specific vector instructions are enabled by them.

I don't see how this is relevant. Please provide an example of how this happens, or better yet file an issue upstream: https://github.com/OpenChemistry/avogadrolibs/issues

a.kudelin commented on 2019-05-06 11:07

Please, add python-cclib to dependencies and unset CFLAGS and CXXFLAGS which cause the Eigen3 crash when specific vector instructions are enabled by them.

berquist commented on 2018-09-07 03:05

I've disabled MMTF, so this should be fixed now.

unkcpz commented on 2018-08-31 05:02

I got following error while makepkg --nocheck:

-- Determined Source Version : 1.91.0-25-g207b959f CMake Error at /usr/share/cmake-3.12/Modules/FindPackageHandleStandardArgs.cmake:137 (message): Could NOT find MMTF (missing: MMTF_INCLUDE_DIR) Call Stack (most recent call first): /usr/share/cmake-3.12/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE) cmake/FindMMTF.cmake:13 (find_package_handle_standard_args) avogadro/io/CMakeLists.txt:4 (find_package)

-- Configuring incomplete, errors occurred! See also "/tmp/avogadrolibs-git/src/avogadrolibs/CMakeFiles/CMakeOutput.log". ==> ERROR: A failure occurred in build(). Aborting...

Tharbad commented on 2018-08-04 23:35

Getting: !! No providers for libmsym found.

berquist commented on 2018-04-06 18:38

You should run makepkg with --nocheck.

silent commented on 2018-04-01 11:10

The following tests FAILED: 21 - QtGui-GenericHighlighter (SEGFAULT) 23 - QtGui-Molecule (Failed) 25 - QtGui-RWMolecule (Failed) Errors while running CTest make: *** [Makefile:73: test] Error 8