Package Details: fsl 6.0.7.14-1

Git Clone URL: https://aur.archlinux.org/fsl.git (read-only, click to copy)
Package Base: fsl
Description: A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
Upstream URL: http://www.fmrib.ox.ac.uk/fsl/
Licenses: custom
Submitter: fishburn
Maintainer: tobac
Last Packager: tobac
Votes: 12
Popularity: 0.000000
First Submitted: 2012-07-02 23:36 (UTC)
Last Updated: 2024-10-23 13:32 (UTC)

Dependencies (1)

Required by (4)

Sources (1)

Latest Comments

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<deleted-account> commented on 2012-12-05 16:23 (UTC)

I still can't get it to compile. I tried to change the line "cp -r "${FSLDIR}/config/[...]" "${FSLDIR}/config/${FSLMACHTYPE}"" to "linux_32-gcc4.7" and others without results. At the moment I'm a bit busy (until monday at least), so I didn't look into it, but in build.log I saw that somehow gcc is still trying to compile with the -m64 flag. Maybe the reason is that I'm on a 32 bit system, but my CPU is 64 bit (this system is almost two years old, I remember I did this for a reason but I don't remember what it was). If I can't get it to build I'll probably reinstall a 64 bit system.

<deleted-account> commented on 2012-12-04 20:05 (UTC)

Thank you cornholio! I'll try to fiddle with the PKGBUILD tonight or tomorrow.

fishburn commented on 2012-12-04 20:04 (UTC)

@sftrydtry @twistane, Interesting, Line 24 of the PKGBUILD attempts to do exactly that, using sed. I wonder if that command is failing for both of you for some reason.

fishburn commented on 2012-12-04 20:00 (UTC)

Ah, this may be a problem with the config file not being set up for i686. The problem lies with line 21: cp -r "${FSLDIR}/config/linux_64-gcc4.4" "${FSLDIR}/config/${FSLMACHTYPE} I cannot investigate further right now, but it might be just a simple tweak in that file to allow x86 compilation. Please report back if you get it working or I will patch the PKGBUILD for it when I have more time.

<deleted-account> commented on 2012-12-04 19:31 (UTC)

Thank you for your answer, cornholio. * output of gcc -m64 -v: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-linux-gnu/4.7.2/lto-wrapper Target: i686-pc-linux-gnu Configured with: /build/src/gcc-4.7.2/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --enable-libstdcxx-time --enable-gnu-unique-object --enable-linker-build-id --with-ppl --enable-cloog-backend=isl --disable-ppl-version-check --disable-cloog-version-check --enable-lto --enable-gold --enable-ld=default --enable-plugin --with-plugin-ld=ld.gold --with-linker-hash-style=gnu --disable-multilib --disable-libssp --disable-build-with-cxx --disable-build-poststage1-with-cxx --enable-checking=release Thread model: posix gcc version 4.7.2 (GCC) * Output of g++ -v: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-linux-gnu/4.7.2/lto-wrapper Target: i686-pc-linux-gnu Configured with: /build/src/gcc-4.7.2/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --enable-libstdcxx-time --enable-gnu-unique-object --enable-linker-build-id --with-ppl --enable-cloog-backend=isl --disable-ppl-version-check --disable-cloog-version-check --enable-lto --enable-gold --enable-ld=default --enable-plugin --with-plugin-ld=ld.gold --with-linker-hash-style=gnu --disable-multilib --disable-libssp --disable-build-with-cxx --disable-build-poststage1-with-cxx --enable-checking=release Thread model: posix gcc version 4.7.2 (GCC) * Output of uname -a Linux arch-box 3.6.8-1-ARCH #1 SMP PREEMPT Tue Nov 27 07:58:01 CET 2012 i686 GNU/Linux Arch is i686, but I thought I could build it since in PKGBUILD I saw "arch=("i686" "x86_64")". Thank you!

fishburn commented on 2012-12-04 19:24 (UTC)

@carpenoctem Wow, that is an impressive list of errors. My guess would be that your version of gcc doesn't support 64-bit. What version of gcc are you using (output of `gcc -v` and `g++ -v`)? Also, what do you get for `uname -a`?

<deleted-account> commented on 2012-12-04 19:15 (UTC)

Hello, I'm getting this error: !!ERROR in BUILD!! Could not make the following projects successfully: extras utils znzlib niftiio fslio giftiio miscmaths newimage libvis first_lib meshclass fslvtkio basisfield warpfns bint shapeModel MVdisc fslsurface libmeshutils avwutils bet2 cluster fast4 feat5 film filmbabe flirt fabber mcflirt melodic misc_c miscvis mm randomise siena slicetimer susan tbss fnirt fugue asl_mfree fdt first possum flameo oxford_asl qboot topup ptx2 lesions eddy In build.log I see a bunch of these that seem to be causing the failure: gifencode.c:1:0: sorry, unimplemented: 64-bit mode not compiled in bandmat.cxx:1:0: sorry, unimplemented: 64-bit mode not compiled in bdtr.c:1:0: sorry, unimplemented: 64-bit mode not compiled in hist.cxx:1:0: sorry, unimplemented: 64-bit mode not compiled in matches.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in functions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in usage.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in check.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in parse.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in log.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in time_tracer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in znzlib.c:1:0: sorry, unimplemented: 64-bit mode not compiled in nifti1_io.c:1:0: sorry, unimplemented: 64-bit mode not compiled in fslio.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifti_tool.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifti_io.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifti_xml.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifti_test.c:1:0: sorry, unimplemented: 64-bit mode not compiled in miscmaths.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in optimise.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in miscprob.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in kernel.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in histogram.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in base2z.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in t2z.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in f2z.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in minimize.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in cspline.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in sparse_matrix.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in sparsefn.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in rungekutta.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in nonlin.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in bfmatrix.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in lazy.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in newimage.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in generalio.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in newimagefns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in complexvolume.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in imfft.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in costfns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in miscplot.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in miscpic.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in first_mesh.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in first_newmat_vec.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in point.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in mpoint.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in triangle.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in mesh.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in pt_special.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in profile.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in drawmesh.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in selfintersection.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in fslvtkio.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in dctfield.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in splinefield.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in basisfield.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in splines.c:1:0: sorry, unimplemented: 64-bit mode not compiled in warpfns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirt_file_reader.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirt_file_writer.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in point_list.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in model.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in lsmcmcmanager.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in lslaplacemanager.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in bintoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in meanoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mean.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in shapeModel.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in MVdisc.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurfacefns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurfaceio.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurface.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurface_first.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurface_dataconv.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsurfacemaths.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in meshUtils.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in run_mesh_utils.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslorient.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslstats.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslmerge.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslpspec.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslroi.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslnvols.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl2ascii.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslascii2img.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsplit.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslcc.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslinterleave.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslhd.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslcpgeom.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslcreatehd.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslcorrecthd.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslmaths.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslcomplex.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslfft.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslmeants.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslslice.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslswapdim.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslchfiletype.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fslsmoothfill.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in bet2.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in betsurf.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in robustfov.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in smoothest.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in cluster.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in infer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in connectedcomp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fast_two.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mriseg_two.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in multi_mriseg_two.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in cutoffcalc.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in featlib.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in generateConfounds.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in popp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in pnm_evs.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ContrastMgrOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ContrastMgr.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in gaussComparer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in AutoCorrEstimator.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in glm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in paradigm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in FilmOlsOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in FilmGlsOptionsRes.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in FilmGlsOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in glimGls.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in film_gls.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in contrast_mgr.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ttoz.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ftoz.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ttologp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in halfcosbasisoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in filmbabe_manager.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in filmbabeoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in filmbabe_vb_flobs.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in filmbabe.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in halfcosbasis.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in globaloptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in flirt.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in convert_xfm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in avscale.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in rmsdiff.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in std2imgcoord.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in img2stdcoord.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in img2imgcoord.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in applyxfm4D.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in pointflirt.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in makerot.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in midtrans.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_custom.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_flobs.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in tools.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_q2tips.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in inference_spatialvb.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in dataset.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in inference_vb.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in noisemodel.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in noisemodel_white.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_quipss2.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_pcASL.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_simple.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_linear.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in noisemodel_ar.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in inference.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in dist_mvn.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in easylog.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in easyoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_asl_grase.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_asl_buxton.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in inference_nlls.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_asl_pvc.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_asl_satrecov.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_asl_quasar.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fwdmodel_cest.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fabber.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mvntool.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mcflirt.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in Globaloptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in Log.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ggmix.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melhlprfns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl_regfilt.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl_glm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in meloptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melgmix.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in meldata.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melpca.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melica.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melreport.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in melodic.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in whirlgif.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifdecod.c:1:0: sorry, unimplemented: 64-bit mode not compiled in gifencod.c:1:0: sorry, unimplemented: 64-bit mode not compiled in hist2prob.c:1:0: sorry, unimplemented: 64-bit mode not compiled in ptoz.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in tmpnam.c:1:0: sorry, unimplemented: 64-bit mode not compiled in ztop.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in slicer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in overlay.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl_tsplot.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl_boxplot.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fsl_histogram.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in create_lut.c:1:0: sorry, unimplemented: 64-bit mode not compiled in writepng.c:1:0: sorry, unimplemented: 64-bit mode not compiled in wpng.c:1:0: sorry, unimplemented: 64-bit mode not compiled in pngappend.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mmoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mixture_model.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in randomise.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ranopts.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fdr.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in unconfound.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in siena_diff.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in slicetimer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in susan.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in distancemap.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in tbss_skeleton.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in swap_voxelwise.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in swap_subjectwise.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirt_costfunctions.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in intensity_mappers.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in matching_points.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirtfns.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirt.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in new_invwarp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in prelude.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in unwarpfns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fugue.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in applywarp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in convertwarp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in sigloss.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in invwarp.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fnirtfileutils.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in readoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in asl_mfree_functions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in asl_mfree.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in dtifit.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in dtifitOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in diffmodels.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in Bingham_Watson_approx.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ccops.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ccopsOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in medianfilter.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in make_dyadic_vectors.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in vecreg.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in xfibres.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in xfibresoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in probtrackx.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in probtrackxOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in streamlines.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_simple.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_seedmask.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_twomasks.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_nmasks.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_meshmask.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in pvmfit.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in pvmfitOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in reord_OM.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in sausages.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in replacevols.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in fdt_matrix_ops.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in indexer.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in rearrange.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in xfibres_pred.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in first.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in first_utils.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in first_mult_bcorr.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in possum.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in possumfns.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in spharm_rm.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in signal2image.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in pulse.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in systemnoise.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in possum_sum.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in b0calc.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in design.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in mcmc_mh.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in gsoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in gsmanager.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in flameo.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in readoptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in asl_functions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in asl_file.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in qboot.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in qbootOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in topup_file_io.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in topup_costfunctions.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in topupfns.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in topup.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in displacement_vector.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in applytopup.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in probtrackx.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in probtrackxOptions.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in streamlines.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_simple.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_seedmask.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in ptx_nmasks.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in csv.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in csv_mesh.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in surf2surf.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in surf2volume.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in surf_proj.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in label2surf.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in find_the_biggest.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in proj_thresh.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in lesion_filling.cc:1:0: sorry, unimplemented: 64-bit mode not compiled in eddy.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in EddyCommandLineOptions.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in ECModels.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in ECScanClasses.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in EddyUtils.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in EddyHelperClasses.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in DiffusionGP.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in b0Predictor.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in ../topup/topup_file_io.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in ../topup/displacement_vector.cpp:1:0: sorry, unimplemented: 64-bit mode not compiled in I guess I'm missing something obvious.

<deleted-account> commented on 2012-11-14 20:06 (UTC)

@cornholio @sftrydtry I have successfully compiled the fsl 5.0.1 under fedora 17. I met the same problem with @sftrytry, that is fslsurface cannot be compiled. The solution is edit /src/fslsurface_structs.h: uncomment #include <cmath>. Then it is compiled successfully. ptx2's compilation is depended on fslsurface.

fishburn commented on 2012-10-22 04:07 (UTC)

@sftrytry: This looks familiar, but I thought the issue was resolved since it has been compiling fine for others. I can't remember the details on this problem, but I think only one of these is failing and is causing the other to fail because it is a dependency. I would try to compile each project independently and see what errors you get during the build.

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