This package will install both the oxpy and oxDNA_analysis_tools Python libraries, and all dependencies all portions of them require. As oxDNA with CUDA will currently not build with GCC 12, it also depends on GCC 11.
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Package Details: oxdna-cuda-git v3.2.1.r257.g6794178f-1
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| Git Clone URL: | https://aur.archlinux.org/oxdna-cuda-git.git (read-only, click to copy) |
|---|---|
| Package Base: | oxdna-cuda-git |
| Description: | DNA/RNA/etc simulator, from lorenzo-rovigatti/oxDNA, with CUDA support and analysis tools. |
| Upstream URL: | https://github.com/lorenzo-rovigatti/oxDNA |
| Licenses: | GPL3 |
| Conflicts: | oxdna |
| Provides: | oxdna |
| Submitter: | cge |
| Maintainer: | cge |
| Last Packager: | cge |
| Votes: | 1 |
| Popularity: | 0.018327 |
| First Submitted: | 2022-09-07 15:10 (UTC) |
| Last Updated: | 2022-09-09 13:29 (UTC) |
Dependencies (15)
- ipython (ipython-git)
- python-biopython
- python-matplotlib (python-matplotlib-git)
- python-scikit-learn (python-scikit-learn-git)
- python-setuptools
- python3 (python)
- cmake (cmake-git) (make)
- cuda (cuda-11.0, cuda11.1) (make)
- gcc11 (make)
- git (git-vfs, git-git, git-run-command-patch-git) (make)
- gsl (gsl-git) (make)
- python-build (make)
- python-installer (python-installer-git) (make)
- python-wheel (make)
- python-matplotlib (python-matplotlib-git) (optional) – for plotting
Pinned Comments
cge commented on 2022-09-07 15:32 (UTC)
This package will install both the oxpy and oxDNA_analysis_tools Python libraries, and all dependencies all portions of them require. As oxDNA with CUDA will currently not build with GCC 12, it also depends on GCC 11.