AUR (en) - petsc-git

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Package Details: petsc-git 3.18.1.r24.g1f6a6395d11-1

Git Clone URL:	https://aur.archlinux.org/petsc-git.git (read-only, click to copy)
Package Base:	petsc-git
Description:	Portable, extensible toolkit for scientific computation
Upstream URL:	https://petsc.org
Licenses:	custom:BSD-2-clause
Conflicts:	petsc
Provides:	petsc, petsc4py
Submitter:	heitzmann
Maintainer:	carlosal1015
Last Packager:	carlosal1015
Votes:	2
Popularity:	0.000000
First Submitted:	2019-02-05 14:41 (UTC)
Last Updated:	2022-11-02 03:36 (UTC)

Git Clone URL:

https://aur.archlinux.org/petsc-git.git (read-only, click to copy)

Package Base:

petsc-git

Description:

Portable, extensible toolkit for scientific computation

Upstream URL:

https://petsc.org

Licenses:

custom:BSD-2-clause

Conflicts:

petsc

Provides:

petsc, petsc4py

Submitter:

heitzmann

Maintainer:

carlosal1015

Last Packager:

carlosal1015

Votes:

Popularity:

0.000000

First Submitted:

2019-02-05 14:41 (UTC)

Last Updated:

2022-11-02 03:36 (UTC)

Dependencies (36)

eigen (eigen-git^AUR)
fftw (fftw-amd^AUR)
lapack (aocl-libflame-aocc^AUR, blas-mkl^AUR, lapack-git^AUR, atlas-lapack^AUR, blas-aocl-gcc^AUR, blas-aocl-aocc^AUR, openblas-lapack^AUR, aocl-libflame^AUR, blas-openblas)
openmpi (openmpi-git^AUR)
python-mpi4py (python-mpi4py-intel^AUR)
python-numpy (python-numpy-flame^AUR, python-numpy-mkl-bin^AUR, python-numpy-git^AUR, python-numpy-mkl^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat^AUR)
chrpath (chrpath-git^AUR) (make)
cmake (cmake-git^AUR) (make)
cython (cython-git^AUR, cython0) (make)
gcc (gccrs-git^AUR, gcc11^AUR, gcc-git^AUR) (make)
gcc-fortran (gccrs-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-git^AUR) (make)
git (git-git^AUR) (make)
hypre^AUR (make)
pkgconf (pkgconf-git^AUR) (make)
sowing (make)
boost (boost-git^AUR) (optional) – Free peer-reviewed portable C++ source libraries
cgns (cgns-parallel^AUR) (optional) – Recording and recovering computer data
eigen (eigen-git^AUR) (optional) – Lightweight C++ template library for vector and matrix math
fftw (fftw-amd^AUR) (optional) – Fast-Fourier Transform
gdb (gdb-git^AUR, gdb-debug-git^AUR) (optional) – Debugging
hdf5 (hdf5-git^AUR, hdf5-openmpi) (optional) – large files
hwloc (optional) – Portable Hardware Locality (abstraction of hierarchical architectures)
libpng (libpng-git^AUR, libpng-apng^AUR) (optional)
libyaml (libyaml-git^AUR) (optional) – configuration files
med (med-openmpi) (optional) – Data Modelization and Exchanges (meshes)
metis^AUR (optional) – Partitioning library (for meshes)
mumps^AUR (mumps-seq-shared^AUR, mumps-par^AUR, mumps-seq^AUR, mumps-cmake^AUR) (optional) – Sparse solver library
netcdf-openmpi (optional) – Management of array-data
opencl (amdapp-sdk^AUR) (optional) – GPU computing
opencl-headers (opencl-headers-git^AUR) (optional) – for opencl (GPU computing)
openmp (optional) – Parallel distributed tasks
scalapack^AUR (optional) – Parallel memory linear algebra
scotch^AUR (scotch-git^AUR) (optional) – Partitioning with sparse matrices
suitesparse (optional) – Sparse matrix library
superlu (optional) – Subroutines for sparsse linear systems

Required by (26)

coolfluid-svn (requires petsc)
damask (requires petsc) (make)
damask-grid (requires petsc)
damask-grid (requires petsc) (make)
damask-mesh (requires petsc)
damask-mesh (requires petsc) (make)
deal-ii (requires petsc) (optional)
dolfin (requires petsc)
dolfin-hpc (requires petsc)
dolfinx (requires petsc)
dolfinx-git (requires petsc)
fenics-basix-git (requires petsc) (check)
freefem (requires petsc) (optional)
libmesh-petsc (requires petsc)
petsc4foam (requires petsc)
pism (requires petsc)
precice (requires petsc)
precice-git (requires petsc)
python-basix-git (requires petsc)
python-clawpack (requires petsc) (optional)
Show 6 more...

Sources (2)

Latest Comments

« First ‹ Previous 1 2 3 Next › Last »

killozap commented on 2019-09-30 14:06 (UTC)

petsc was moved to https://gitlab.com/petsc/petsc

jvellojin commented on 2019-04-05 16:54 (UTC) (edited on 2019-04-05 16:54 (UTC) by jvellojin)

On a fresh installed Arch, with openmpi frozen on version 3.x,fftw-mpi, I get the following error when building petsc-git:

/var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp: En la función miembro ‘virtual void dolfin::PETScVector::gather(dolfin::GenericVector&, const std::vector<int>&) const’: /var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp:753:10: error: ‘VecScatterCreateWithData’ no se declaró en este ámbito ierr = VecScatterCreateWithData(_x, from, _y.vec(), to, &scatter); ^~~~~~~~~~~~~~~~~~~~~~~~ /var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp:753:10: nota: suggested alternative: ‘VecScatterCreateToZero’ ierr = VecScatterCreateWithData(_x, from, _y.vec(), to, &scatter); ^~~~~~~~~~~~~~~~~~~~~~~~ VecScatterCreateToZero make[2]: [dolfin/CMakeFiles/dolfin.dir/build.make:1935: dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o] Error 1 make[2]: Se espera a que terminen otras tareas.... make[1]: [CMakeFiles/Makefile2:273: dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: [Makefile:141: all] Error 2 ==> ERROR: Se produjo un fallo en build(). Cancelando...

linux_dream commented on 2019-02-19 20:32 (UTC)

Yeah, I've just tried that, but then it's scalapack's turn to yield the same build error... I guess the downgrade to openmpi 3 is by far the easiest solution for now.

heitzmann commented on 2019-02-19 20:24 (UTC)

Probably the same issue there... I don't believe you need pastix if you're ok with using superlu, so you might simply want to remove it from the list of downloaded packages for now.

linux_dream commented on 2019-02-19 20:15 (UTC)

Thanks for the tip heitzmann, but by switching to the next branch, I get the same build error with pastix instead of superlu_dist.

heitzmann commented on 2019-02-19 19:58 (UTC)

Yes, but the changes are still in branch next, and by default we use branch maint. You can modify the PKGBUILD to try out next and see if that works.

linux_dream commented on 2019-02-19 19:37 (UTC)

I see heitzmann, indeed, petsc also made a quick fix (because I reported it). However I still face the error:

TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:160) ************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):

Downloaded superlu_dist could not be used. Please check install in /home/isaac/.cache/yay/petsc-git/src/petsc/arch-linux-c-opt

==> ERROR: A failure occurred in build().
Aborting... Error making: petsc-git

Damn...

heitzmann commented on 2019-02-19 09:31 (UTC)

It looks like superlu_dist is already updated. I guess it is only a matter of time until petsc also updates their version.

Mumps should be enabled in this version of petsc: it is set to be downloaded and installed by default. Personally I find Pastix better than Mumps, though. I've had issues with mumps in the past (bugs, maybe).

linux_dream commented on 2019-02-18 21:12 (UTC)

heitzmann, I have reported the error to petsc's Bitbucket repository: https://bitbucket.org/petsc/petsc/issues/260/compatibility-with-openmpi-4. Apparently the error is due to SuperLU that uses a deprecated function that OpenMPI 4 does not support anymore. I am told to try MUMPS instead of SuperLU. Would you happen to have an idea on how to enable MUMPS instead of SuperLU for the petsc compilation?

linux_dream commented on 2019-02-15 21:27 (UTC) (edited on 2019-02-17 13:51 (UTC) by linux_dream)

Thank you heitzmann, that indeed was the culprit. I hope petsc will get fixed soon! I also changed slepc for slepc-git.