AUR (en) - petsc-git

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Package Details: petsc-git 3.18.1.r24.g1f6a6395d11-1

Git Clone URL:	https://aur.archlinux.org/petsc-git.git (read-only, click to copy)
Package Base:	petsc-git
Description:	Portable, extensible toolkit for scientific computation
Upstream URL:	https://petsc.org
Licenses:	custom:BSD-2-clause
Conflicts:	petsc
Provides:	petsc, petsc4py
Submitter:	heitzmann
Maintainer:	carlosal1015
Last Packager:	carlosal1015
Votes:	2
Popularity:	0.000000
First Submitted:	2019-02-05 14:41 (UTC)
Last Updated:	2022-11-02 03:36 (UTC)

Git Clone URL:

https://aur.archlinux.org/petsc-git.git (read-only, click to copy)

Package Base:

petsc-git

Description:

Portable, extensible toolkit for scientific computation

Upstream URL:

https://petsc.org

Licenses:

custom:BSD-2-clause

Conflicts:

petsc

Provides:

petsc, petsc4py

Submitter:

heitzmann

Maintainer:

carlosal1015

Last Packager:

carlosal1015

Votes:

Popularity:

0.000000

First Submitted:

2019-02-05 14:41 (UTC)

Last Updated:

2022-11-02 03:36 (UTC)

Dependencies (36)

eigen (eigen-git^AUR)
fftw (fftw-amd^AUR)
lapack (aocl-libflame-aocc^AUR, blas-mkl^AUR, lapack-git^AUR, atlas-lapack^AUR, blas-aocl-gcc^AUR, blas-aocl-aocc^AUR, openblas-lapack^AUR, aocl-libflame^AUR, blas-openblas)
openmpi (openmpi-git^AUR)
python-mpi4py (python-mpi4py-intel^AUR)
python-numpy (python-numpy-flame^AUR, python-numpy-mkl-bin^AUR, python-numpy-git^AUR, python-numpy-mkl^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat^AUR)
chrpath (chrpath-git^AUR) (make)
cmake (cmake-git^AUR) (make)
cython (cython-git^AUR, cython0) (make)
gcc (gccrs-git^AUR, gcc11^AUR, gcc-git^AUR) (make)
gcc-fortran (gccrs-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-git^AUR) (make)
git (git-git^AUR) (make)
hypre^AUR (make)
pkgconf (pkgconf-git^AUR) (make)
sowing (make)
boost (boost-git^AUR) (optional) – Free peer-reviewed portable C++ source libraries
cgns (cgns-parallel^AUR) (optional) – Recording and recovering computer data
eigen (eigen-git^AUR) (optional) – Lightweight C++ template library for vector and matrix math
fftw (fftw-amd^AUR) (optional) – Fast-Fourier Transform
gdb (gdb-git^AUR, gdb-debug-git^AUR) (optional) – Debugging
hdf5 (hdf5-git^AUR, hdf5-openmpi) (optional) – large files
hwloc (optional) – Portable Hardware Locality (abstraction of hierarchical architectures)
libpng (libpng-git^AUR, libpng-apng^AUR) (optional)
libyaml (libyaml-git^AUR) (optional) – configuration files
med (med-openmpi) (optional) – Data Modelization and Exchanges (meshes)
metis^AUR (optional) – Partitioning library (for meshes)
mumps^AUR (mumps-seq-shared^AUR, mumps-par^AUR, mumps-seq^AUR, mumps-cmake^AUR) (optional) – Sparse solver library
netcdf-openmpi (optional) – Management of array-data
opencl (amdapp-sdk^AUR) (optional) – GPU computing
opencl-headers (opencl-headers-git^AUR) (optional) – for opencl (GPU computing)
openmp (optional) – Parallel distributed tasks
scalapack^AUR (optional) – Parallel memory linear algebra
scotch^AUR (scotch-git^AUR) (optional) – Partitioning with sparse matrices
suitesparse (optional) – Sparse matrix library
superlu (optional) – Subroutines for sparsse linear systems

Required by (26)

coolfluid-svn (requires petsc)
damask (requires petsc) (make)
damask-grid (requires petsc)
damask-grid (requires petsc) (make)
damask-mesh (requires petsc)
damask-mesh (requires petsc) (make)
deal-ii (requires petsc) (optional)
dolfin (requires petsc)
dolfin-hpc (requires petsc)
dolfinx (requires petsc)
dolfinx-git (requires petsc)
fenics-basix-git (requires petsc) (check)
freefem (requires petsc) (optional)
libmesh-petsc (requires petsc)
petsc4foam (requires petsc)
pism (requires petsc)
precice (requires petsc)
precice-git (requires petsc)
python-basix-git (requires petsc)
python-clawpack (requires petsc) (optional)
Show 6 more...

Sources (2)

Latest Comments

« First ‹ Previous 1 2 3

heitzmann commented on 2019-02-14 22:14 (UTC)

This problem is related to the updated openmpi package to version 4. I believe PETSc only supports version 3 at this moment. I had the same issue and could only make it work by downgrading openmpi back to the last version. If you do, make sure you recompile any packages that depend on it, such as fftw-mpi.

linux_dream commented on 2019-02-14 21:50 (UTC)

I had the same problem as jvellojin, I installed fftw-mpi (had to remove fftw). Then I faced a similar problem with hdf5 and hdf5-openmpi. That problem was solved too.

However here is another, much nastier problem I'm facing:

=============================================================================== Compiling and installing SUPERLU_DIST; this may take several minutes =============================================================================== TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:160) ************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):

Downloaded superlu_dist could not be used. Please check install in /home/linuxdream/.cache/yay/petsc-git/src/petsc/arch-linux-c-opt

==> ERROR: A failure occurred in build().
Aborting... Error making: petsc-git

I'm really lost now... Needless to say the petsc package also returned the same problem(s).

heitzmann commented on 2019-02-11 12:34 (UTC)

I believe it works with fftw-mpi. It might work with fftw if you set --with-mpi=0, but I haven't tried that.

jvellojin commented on 2019-02-11 12:28 (UTC)

When trying to install from pamac gives the following error when building PETSC:

Unable to find fftw in default locations! Perhaps you can specify with --with-fftw-dir=<directory> If you do not want fftw, then give --with-fftw=0 You might also consider using --download-fftw instead.

Setting --with-fftw=0 is followed by the error: CMake Error at /usr/share/cmake-3.13/Modules/FindPackageHandleStandartArgs.cmake:137 (message): PETSc could not be found. Be sure to set PETSC DIR. (missing: PETSC FOUND)