Also, adding hypre and suitesparse to the list of optional dependencies could be considered since test_optdepends.sh looks for them.
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Package Details: petsc 3.22.1-1
Package Actions
| Git Clone URL: | https://aur.archlinux.org/petsc.git (read-only, click to copy) |
|---|---|
| Package Base: | petsc |
| Description: | Portable, extensible toolkit for scientific computation |
| Upstream URL: | https://petsc.org |
| Keywords: | computing scientific |
| Licenses: | BSD |
| Provides: | petsc4py |
| Submitter: | heitzmann |
| Maintainer: | MartinDiehl |
| Last Packager: | MartinDiehl |
| Votes: | 19 |
| Popularity: | 0.000001 |
| First Submitted: | 2018-02-24 11:36 (UTC) |
| Last Updated: | 2024-11-23 14:08 (UTC) |
Dependencies (30)
- fftw-openmpi
- gsl (gsl-gitAUR)
- hdf5-openmpi
- lapack (aocl-libflame-aoccAUR, lapack-gitAUR, atlas-lapackAUR, blas-aocl-gccAUR, blas-aocl-aoccAUR, openblas-lapackAUR, blas-mklAUR, aocl-libflameAUR, blas-openblas)
- libjpeg-turbo (mozjpeg-gitAUR, libjpeg-turbo-gitAUR, mozjpegAUR)
- libyaml (libyaml-gitAUR)
- netcdf-openmpi
- openmpi (openmpi-gitAUR)
- python-mpi4py (python-mpi4py-intelAUR)
- python-numpy (python-numpy-flameAUR, python-numpy-gitAUR, python-numpy1AUR, python-numpy-mkl-tbbAUR, python-numpy-mklAUR, python-numpy-mkl-binAUR)
- suitesparse
- superlu
- zfp
- zlib (zlib-ng-compat-gitAUR, zlib-gitAUR, zlib-ng-compat)
- cmake (cmake-gitAUR) (make)
- cython (cython-gitAUR, cython0AUR) (make)
- gcc (gcc-gitAUR, gccrs-gitAUR, gcc11AUR, gcc-snapshotAUR) (make)
- gcc-fortran (gcc-fortran-gitAUR, gcc11-fortranAUR, gcc-fortran-snapshotAUR) (make)
- python-setuptools (make)
- hypreAUR (optional) – support for HYPRE
- Show 10 more dependencies...
Required by (26)
- coolfluid-svn
- damask (make)
- damask-grid
- damask-grid (make)
- damask-mesh
- damask-mesh (make)
- deal-ii (optional)
- dolfin
- dolfin-hpc
- dolfinx
- dolfinx-git
- fenics-basix-git
- freefem (optional)
- libmesh-petsc
- petsc4foam
- pism
- precice
- precice-git
- python-basix-git
- python-clawpack (optional)
- python-damask (make)
- python-dolfin (optional)
- python-pyop2
- slepc
- sparselizard
- underworld2-git
Sources (2)
mcovalt commented on 2018-05-15 18:45 (UTC)
linux_dream commented on 2018-05-09 18:51 (UTC)
Thank you @heitzmann. I've rebuilt scalapack, I think it was the culprit. I could upgrade petsc without any problem.
heitzmann commented on 2018-05-08 13:45 (UTC)
linux_dream, have you recompiled all your locally compiled dependencies after upgrading gcc-libs? That's probably the reason.
linux_dream commented on 2018-05-08 13:40 (UTC) (edited on 2018-05-08 13:41 (UTC) by linux_dream)
I can't seem to be able to upgrade 3.9.0-1 -> 3.9.1-1. I get:
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
Unable to find scalapack in default locations! Perhaps you can specify with --with-scalapack-dir=<directory> If you do not want scalapack, then give --with-scalapack=0 You might also consider using --download-scalapack instead</directory>
Any idea on how to fix the problem?
Pinned Comments
MartinDiehl commented on 2022-10-06 10:26 (UTC)
@jrohwer
When building PETSc (more specifically, petsc4py), one test (ex100 from ksp) will fail if a previous (major) version is installed. I could not figure out why this happens. The solution would be to build in a clean root (which is a little bit complicated due to dependency on other AUR packages) or simply uninstall the old version before.
Any help to solve this issue is welcomed.