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Package Details: r-biocgenerics 0.50.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-biocgenerics.git (read-only, click to copy) |
|---|---|
| Package Base: | r-biocgenerics |
| Description: | S4 generic functions used in Bioconductor |
| Upstream URL: | https://bioconductor.org/packages/release/bioc/html/BiocGenerics.html |
| Licenses: | Artistic2.0 |
| Submitter: | sauliusl |
| Maintainer: | greyltc (peippo) |
| Last Packager: | peippo |
| Votes: | 1 |
| Popularity: | 0.117976 |
| First Submitted: | 2017-03-16 17:11 (UTC) |
| Last Updated: | 2024-09-09 10:20 (UTC) |
Dependencies (16)
- r (r352AUR, r-mklAUR)
- r-affyAUR (optional)
- r-affyplmAUR (optional)
- r-annotateAUR (optional)
- r-annotationdbiAUR (optional)
- r-biobaseAUR (optional)
- r-biostringsAUR (optional)
- r-delayedarrayAUR (optional)
- r-deseq2AUR (optional)
- r-flowclustAUR (optional)
- r-genomicrangesAUR (optional)
- r-irangesAUR (optional)
- r-msnbaseAUR (optional)
- r-rsamtoolsAUR (optional)
- r-runitAUR (optional)
- r-s4vectorsAUR (optional)
Required by (753)
- r-a4preproc
- r-acde (optional)
- r-acme
- r-adverscarial (check)
- r-adverscarial (optional)
- r-affy
- r-affycoretools
- r-affylmgui
- r-affyplm
- r-aggregatebiovar (optional)
- r-aims (optional)
- r-alabaster.bumpy
- r-alabaster.files
- r-alabaster.matrix
- r-alabaster.ranges
- r-alabaster.se
- r-allelicimbalance
- r-altcdfenvs
- r-amplican
- r-aneufinder
- r-annmap
- r-annotate
- r-annotationdbi
- r-annotationforge
- r-annotationhub
- r-annotationhubdata
- r-aroma.affymetrix (optional)
- r-aspli
- r-asset (optional)
- r-asurat (optional)
- r-atacseqqc
- r-atacseqtfea
- r-atena
- r-aucell
- r-autonomics
- r-baalchip (optional)
- r-bambu
- r-bamsignals
- r-basics
- r-batchelor
- r-bayseq (optional)
- r-bdmmacorrect (optional)
- r-beachmat
- r-beadarray
- r-bigmelon
- r-bigmelon (optional)
- r-bigpint (optional)
- r-bioassayr
- r-biobase
- r-bioccheck (optional)
- r-biocgraph
- r-biochail
- r-biocio
- r-biocparallel (optional)
- r-biocsingular
- r-biocstyle (optional)
- r-biocviews (optional)
- r-biomm (optional)
- r-biosigner (optional)
- r-biostrings
- r-biotmle
- r-biovizbase
- r-birewire (optional)
- r-biscuiteer
- r-biseq
- r-blima
- r-blma (optional)
- r-bloodgen3module (optional)
- r-bnbc
- r-bnem (optional)
- r-borealis (check)
- r-borealis (optional)
- r-breakpointr
- r-browserviz
- r-bsgenome
- r-bsgenomeforge
- r-bsseq
- r-bubbletree
- r-bumphunter
- r-buscorrect (optional)
- r-busparse
- r-busseq (optional)
- r-cafe (optional)
- r-cagefightr
- r-cager
- r-camera (optional)
- r-cancersubtypes (optional)
- r-cand (optional)
- r-cardinal
- r-casper
- r-category
- r-categorycompare
- r-causalr (optional)
- r-ccrepe (optional)
- r-cdi (check)
- r-cdi (optional)
- r-celaref
- r-cellarepertorium
- r-cellbench
- r-cellhts2
- r-cellmigration (optional)
- r-cellmixs
- r-cellnoptr (optional)
- r-celltrails
- r-cexor (optional)
- r-cfdnapro
- r-cghmcr
- r-champdata
- r-chemmineob
- r-chemminer
- r-chic
- r-chihaya (optional)
- r-chipanalyser (optional)
- r-chipcomp
- r-chipenrich
- r-chipenrich.data
- r-chippeakanno
- r-chipqc
- r-chipseeker
- r-chipseq
- r-chipseqr
- r-chipxpress (optional)
- r-chromheatmap
- r-chromstar
- r-chromvar
- r-chronos (optional)
- r-cicero
- r-cindex (optional)
- r-cleanupdtseq (optional)
- r-clipper (optional)
- r-clonotyper (optional)
- r-clustcomp (optional)
- r-clusterexperiment
- r-clusterseq
- r-cn.mops
- r-cner
- r-cnorfeeder (optional)
- r-cnorfuzzy (optional)
- r-cnvpanelizer
- r-cnvranger
- r-cocoa
- r-codelink
- r-coexnet (optional)
- r-cola
- r-comet (optional)
- r-compepitools
- r-compounddb
- r-consensus (optional)
- r-consensusde
- r-consensusseeker
- r-contibait
- r-copynumber
- r-coregx
- r-cosmiq (optional)
- r-cosnet (optional)
- r-cpvsnp (optional)
- r-crisprbase
- r-crisprscore
- r-crisprseek
- r-crlmm
- r-crossmeta
- r-csaw
- r-ctggem
- r-cummerbund
- r-cydar
- r-cytotree (optional)
- r-dada2
- r-daglogo
- r-damefinder
- r-ddct
- r-decomptumor2sig
- r-deconvr
- r-degreport
- r-delayedarray
- r-delayeddataframe
- r-demuxsnp
- r-derfinder
- r-descan2
- r-deseq2
- r-despace
- r-destiny
- r-desubs (optional)
- r-dewseq
- r-dexma (optional)
- r-dexseq
- r-diffcoexp
- r-diffhic
- r-dirichletmultinomial
- r-discorhythm
- r-dmrcaller (optional)
- r-dmrcate (optional)
- r-dnafusion
- r-dreamlet
- r-drimseq
- r-dropletutils
- r-drugvsdisease
- r-easyrnaseq
- r-ebimage
- r-edaseq
- r-eir
- r-eisar
- r-encodexplorer (optional)
- r-encodexplorerdata (optional)
- r-enhancedvolcano (optional)
- r-enhancerhomologsearch
- r-enmix (check)
- r-enmix (optional)
- r-enrichtf
- r-ensembldb
- r-ensemblvep
- r-epialleler
- r-epigenomix
- r-epimix (check)
- r-epimix (optional)
- r-epimutacions
- r-epinem (optional)
- r-epistack
- r-epitxdb
- r-epivizrchart
- r-epivizrstandalone
- r-erma
- r-esatac
- r-eventpointer (optional)
- r-exomepeak2
- r-experimenthub
- r-experimenthubdata
- r-factr
- r-famagg
- r-fastseg
- r-fccac (optional)
- r-fcscan (optional)
- r-ffpe
- r-fgga (optional)
- r-fgnet (optional)
- r-findit2
- r-findmyfriends
- r-flames
- r-flowbin
- r-flowcl (optional)
- r-flowclust
- r-flowcore
- r-flowcut (optional)
- r-flowfp
- r-flowsom
- r-flowspecs
- r-flowstats
- r-flowtime (optional)
- r-flowworkspace
- r-fmcsr
- r-fmrs (optional)
- r-fraser
- r-frma
- r-ga4ghclient
- r-ga4ghshiny
- r-gatefinder (optional)
- r-gcapc
- r-gcrisprtools (optional)
- r-gdnainrnaseqdata
- r-gdnax
- r-gdsarray
- r-gdsfmt (check)
- r-gdsfmt (optional)
- r-gem (optional)
- r-genbankr
- r-geneattribution
- r-geneclassifiers
- r-genenetworkbuilder (optional)
- r-geneoverlap (optional)
- r-geneplast (optional)
- r-geneplotter
- r-generxcluster (optional)
- r-genesis
- r-genetclassifier (optional)
- r-genomation (optional)
- r-genomautomorphism
- r-genomeinfodb
- r-genomeintervals
- r-genomicalignments
- r-genomicfeatures
- r-genomicfiles
- r-genomicinteractions
- r-genomicplot
- r-genomicranges
- r-genomicscores
- r-genomictuples
- r-genvisr
- r-geomxtools
- r-geoquery (optional)
- r-geotcgadata (optional)
- r-ggbio
- r-girafe
- r-glmgampoi
- r-gmapr
- r-gmoviz
- r-gmrp (optional)
- r-goseq
- r-gostats (optional)
- r-gothic
- r-gpumagic
- r-graph
- r-graphpac (optional)
- r-greylistchip (optional)
- r-gseabase
- r-gsva (optional)
- r-guideseq
- r-gviz
- r-gwastools (optional)
- r-h5vc (optional)
- r-harman (optional)
- r-hdf5array
- r-heatmaps
- r-helloranges
- r-hermes
- r-hiannotator (optional)
- r-hicdcplus (optional)
- r-hicdoc
- r-hicexperiment
- r-hicontacts
- r-hiergwas (optional)
- r-hilda
- r-hireadsprocessor
- r-hireewas (optional)
- r-hopach
- r-hpip (optional)
- r-htseqgenie
- r-hypergraph (optional)
- r-icare (optional)
- r-icetea
- r-iclusterplus (optional)
- r-ifaa (check)
- r-ifaa (optional)
- r-igvr
- r-ihw
- r-illuminaio (optional)
- r-imas
- r-immunotation (optional)
- r-infercnv
- r-inpas (optional)
- r-inpower (optional)
- r-inspect
- r-intad
- r-intansv
- r-interactionset
- r-interactivedisplay
- r-interactivedisplaybase
- r-interest
- r-ioniser
- r-ipo (optional)
- r-iranges
- r-isee
- r-islet
- r-isoformswitchanalyzer
- r-isomirs
- r-ivas
- r-kcsmart
- r-kebabs (optional)
- r-keggandmetacoredzpathwaysgeo
- r-keggdzpathwaysgeo
- r-keggrest (optional)
- r-lace (optional)
- r-ldblock
- r-lemur
- r-lintind
- r-lisaclust
- r-lola
- r-magar (optional)
- r-magpie (check)
- r-magpie (optional)
- r-mapkl (optional)
- r-mariner
- r-maser
- r-massir (optional)
- r-mast
- r-matrixqcvis (optional)
- r-matrixrider (optional)
- r-matter
- r-mbased
- r-mbttest (optional)
- r-mcsea (optional)
- r-meal
- r-mergeomics (optional)
- r-meshr
- r-metab (optional)
- r-metaboannotation
- r-metabosignal (optional)
- r-metagene (optional)
- r-metagene2 (optional)
- r-metagenomeseq (optional)
- r-metams
- r-metaseqr2
- r-metcirc (optional)
- r-methinheritsim
- r-methylaid
- r-methylcc (optional)
- r-methylinheritance (optional)
- r-methylpipe
- r-methylumi
- r-metnet (optional)
- r-mia
- r-miaviz
- r-microbiome (optional)
- r-microbiomemarker
- r-migsa
- r-milor
- r-mimager
- r-mineica
- r-minfi
- r-minimumdistance
- r-mira
- r-mirage
- r-mirbaseconverter (optional)
- r-mircomp (optional)
- r-mirintegrator (optional)
- r-mirlab (optional)
- r-missmethyl
- r-mlinterfaces
- r-mmappr2
- r-mnem (optional)
- r-modstrings
- r-mogsa
- r-monalisa
- r-monocle
- r-moonlight2r
- r-mosbi (optional)
- r-motif2site
- r-motifbreakr
- r-motifdb
- r-motifstack (optional)
- r-mpra
- r-msa
- r-msbackendsql
- r-msexperiment
- r-msnbase
- r-msnid
- r-msquality (optional)
- r-multiassayexperiment
- r-multiclust (optional)
- r-multicrispr
- r-multidataset
- r-multimed (optional)
- r-multimir
- r-multimodalexperiment
- r-multiomicsviz (optional)
- r-multirnaflow (optional)
- r-multtest
- r-mumosa
- r-mungesumstats (optional)
- r-mutationalpatterns
- r-mwastools (optional)
- r-mzr
- r-nadfinder
- r-nanostringnctools
- r-nbsplice (optional)
- r-ncdfflow
- r-ncrnatools (optional)
- r-nearbynding
- r-nempi (optional)
- r-netbiov (optional)
- r-netsam (optional)
- r-ngsreports
- r-nondetects (optional)
- r-norce (optional)
- r-npgsea
- r-nucleosim (optional)
- r-nucler
- r-nxtirfcore
- r-oder
- r-oligo
- r-oligoclasses
- r-omicspca (optional)
- r-oncoscore (optional)
- r-opencyto
- r-openprimer
- r-orfik
- r-organismdbi
- r-outrider
- r-paa (optional)
- r-pandar
- r-panelcn.mops (optional)
- r-parglms
- r-path2ppi (optional)
- r-pathnet (optional)
- r-pathview (optional)
- r-pcamethods
- r-pcatools (optional)
- r-pdatk
- r-pdinfobuilder
- r-pepxmltab (optional)
- r-pharmacogx
- r-phemd
- r-phenomis (optional)
- r-phenstat (optional)
- r-phipdata
- r-phosr
- r-phyloseq
- r-pi
- r-piano
- r-ping
- r-plethy
- r-plyinteractions
- r-plyranges
- r-podkat
- r-potra
- r-powertcr (optional)
- r-pram
- r-primirtss
- r-probamr (optional)
- r-proda
- r-profileplyr
- r-profilescoredist
- r-proloc
- r-prolocgui
- r-proteodisco
- r-psicquic
- r-psmatch
- r-purecn
- r-pwalign
- r-pwmenrich
- r-pwomics
- r-pwrewas (optional)
- r-pwrewas.data (optional)
- r-qfeatures
- r-qpgraph (optional)
- r-qplexanalyzer
- r-qsea
- r-qsutils
- r-qtlexperiment
- r-quantro (optional)
- r-quartpac (optional)
- r-quasr
- r-r3cpet
- r-r453plus1toolbox
- r-radiogx
- r-raer
- r-raggedexperiment
- r-ramr
- r-ramwas
- r-rarevariantvis
- r-rbgl (optional)
- r-rbiopaxparser (optional)
- r-rcade (optional)
- r-rcas
- r-rcellminer (optional)
- r-rcgh (optional)
- r-rcistarget
- r-rcy3
- r-rcyjs
- r-rebet (optional)
- r-recoup
- r-redseq
- r-remp
- r-repitools
- r-reportingtools
- r-resolve (optional)
- r-rfarm (optional)
- r-rgalaxy
- r-rgmql
- r-rgraph2js (optional)
- r-rgraphviz (optional)
- r-rgsea
- r-rgsepd (optional)
- r-ribocrypt
- r-ribodipa
- r-riboprofiling
- r-riboseqr (optional)
- r-ribosomeprofilingqc
- r-ringo
- r-rjmcmcnucleosomes
- r-rnaeditr
- r-rnamodr
- r-rnamodr.alkanilineseq
- r-rnamodr.ml
- r-rnamodr.ribomethseq
- r-rnaseqcovarimpute
- r-rnbeads
- r-roar
- r-rols
- r-rontotools (optional)
- r-ropls (optional)
- r-roseq (optional)
- r-rpa
- r-rqc
- r-rqubic
- r-rsamtools
- r-rsbml
- r-rscudo
- r-rtcgatoolbox
- r-rtn (optional)
- r-rtnduals (optional)
- r-rtnsurvival (optional)
- r-rtracklayer
- r-rtrm (optional)
- r-s4arrays
- r-s4vectors
- r-saigegds (optional)
- r-sangerseqr (optional)
- r-santa (optional)
- r-sarks (optional)
- r-sc3
- r-scarray (optional)
- r-scarray.sat
- r-scater
- r-scdataviz (optional)
- r-scdblfinder
- r-scmap
- r-scmeth (optional)
- r-scnorm
- r-scope
- r-scpipe
- r-scran
- r-screencounter (optional)
- r-scrnaseq
- r-scruff
- r-scry (optional)
- r-scuttle
- r-segmentseq (optional)
- r-seqarray (optional)
- r-seqpattern (optional)
- r-seqtools (optional)
- r-seqvartools
- r-sesamedata (optional)
- r-seurat (optional)
- r-sevenc
- r-sgseq
- r-sharedobject
- r-shinymethyl
- r-shortread
- r-sictools (optional)
- r-sigfeature (optional)
- r-signac
- r-signaturesearch
- r-signer
- r-signifinder
- r-sigsquared (optional)
- r-simat (optional)
- r-similarpeak (optional)
- r-simlr (optional)
- r-simplifyenrichment
- r-single
- r-singlecellexperiment
- r-singlecelltk (optional)
- r-singlemoleculefootprinting
- r-singler (optional)
- r-sitadela
- r-slgi
- r-slingshot (optional)
- r-snphood
- r-snplocs.hsapiens.dbsnp144.grch37
- r-snplocs.hsapiens.dbsnp150.grch38
- r-snprelate (optional)
- r-snpstats
- r-soggi
- r-sojourner (optional)
- r-spacepac (optional)
- r-sparrow
- r-sparsearray
- r-sparsedossa (optional)
- r-sparsesignatures (optional)
- r-spatialexperiment
- r-spatialfeatureexperiment
- r-spatialheatmap (check)
- r-spatialheatmap (optional)
- r-spatiallibd
- r-spatzie
- r-specl (optional)
- r-spectra
- r-splatter
- r-splicewiz
- r-splicinggraphs
- r-spqn
- r-sqldataframe
- r-sracipe
- r-sscu
- r-standr
- r-stategra (optional)
- r-strandcheckr
- r-streamer
- r-stringdb (optional)
- r-structstrings
- r-structuralvariantannotation
- r-suitor (check)
- r-suitor (optional)
- r-summarizedbenchmark
- r-summarizedexperiment
- r-svanumt
- r-svaretro
- r-synmut
- r-systempiper
- r-systempiperdata
- r-systempipetools (optional)
- r-tadar
- r-tapseq
- r-target
- r-tcc (optional)
- r-tcgautils
- r-tcseq
- r-tenxio
- r-teqc
- r-tfbstools
- r-tfea.chip (optional)
- r-tigre
- r-tin (optional)
- r-titancna
- r-topdownr
- r-topgo
- r-toxicogx
- r-trackviewer
- r-transcriptogramer (optional)
- r-transcriptr
- r-transite
- r-transview
- r-trare (optional)
- r-traser (optional)
- r-treeandleaf (optional)
- r-treesummarizedexperiment
- r-trena (optional)
- r-tripr (optional)
- r-trna
- r-trnadbimport (optional)
- r-trnascanimport
- r-tronco (optional)
- r-tsrchitect
- r-tvtb
- r-txcutr
- r-txdbmaker
- r-ularcirc
- r-umi4cats
- r-undo
- r-unifiedwmwqpcr
- r-uniprot.ws
- r-uniquorn (optional)
- r-universalmotif
- r-updateobject
- r-usort
- r-vanillaice
- r-variancepartition (check)
- r-variancepartition (optional)
- r-variantannotation
- r-variantfiltering
- r-varianttools
- r-vcfarray
- r-velociraptor
- r-verso (optional)
- r-wavcluster
- r-weitrix
- r-xcms
- r-xcore (optional)
- r-xde
- r-xtrasnplocs.hsapiens.dbsnp144.grch37
- r-xvector
- r-yamss
- r-zenith (check)
- r-zenith (optional)
Latest Comments
pekkarr commented on 2023-06-20 22:02 (UTC)
@peippo Sorry for the late reply, I didn't get notifications for this package.
Easiest way would be with nvchecker. It doesn't have a Bioconductor source by default, but the
lilacproject (which is an automatic build bot for Arch packages) has therpkgsnvchecker source which I made that can be used to track also Bioconductor packages.You could maybe consider joining the BioArchLinux project (which I recently became a member of), since it maintains a lot of R packages on AUR (and also in a custom repo) with
lilac. The benefit of this is that the packages get updated automatically. The Github repository for the packages is here.You could also setup the
rpkgssource manually fornvchecker, by installing the python code tonvchecker_sourcedirectory in python site-packages, or even use a regexp for the package page in Bioconductor (nvcheckersupports this without any additional setup except writing the regexp, there are examples in the BioArchLinux repo).peippo commented on 2023-06-16 08:25 (UTC)
@pekkarr: Thanks for flagging this out-of-date, will update over the weekend.
Have you found any good way of keeping up to date with the bioconductor packages? For all other repositories, including CRAN, RSS endpoints exist, but bioconductor does not seem have an equivalent, do you know of any?
dviktor commented on 2022-01-17 20:13 (UTC)
I'm leaving maintenance and support for this package in favor of new repository. You can install pre-built packages from my repo