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Package Details: r-genomicranges 1.56.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-genomicranges.git (read-only, click to copy) |
|---|---|
| Package Base: | r-genomicranges |
| Description: | Representation and manipulation of genomic intervals |
| Upstream URL: | https://bioconductor.org/packages/release/bioc/html/GenomicRanges.html |
| Licenses: | Artistic-2.0 |
| Submitter: | greyltc |
| Maintainer: | greyltc (peippo) |
| Last Packager: | peippo |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2019-02-09 14:26 (UTC) |
| Last Updated: | 2024-05-07 12:33 (UTC) |
Dependencies (40)
- r (r352AUR, r-mklAUR)
- r-biocgenericsAUR
- r-genomeinfodbAUR
- r-irangesAUR
- r-s4vectorsAUR
- r-xvectorAUR
- r-annotateAUR (optional)
- r-annotationdbiAUR (optional)
- r-annotationhubAUR (optional)
- r-biobaseAUR (optional)
- r-biocstyleAUR (optional)
- r-biostringsAUR (optional)
- r-bsgenomeAUR (optional)
- r-bsgenome.hsapiens.ucsc.hg19AUR (optional)
- r-bsgenome.mmusculus.ucsc.mm10AUR (optional)
- r-bsgenome.scerevisiae.ucsc.saccer2AUR (optional)
- r-deseq2AUR (optional)
- r-dexseqAUR (optional)
- r-digestAUR (optional)
- r-edgerAUR (optional)
- Show 20 more dependencies...
Required by (622)
- r-ace
- r-alabaster.ranges
- r-alabaster.se
- r-aldex2
- r-allelicimbalance
- r-alpine
- r-alps
- r-amplican
- r-aneufinder
- r-annmap
- r-annotationfilter
- r-annotationhub (optional)
- r-annotationhubdata
- r-annotatr
- r-apalyzer
- r-apeglm
- r-appreci8r
- r-aspli
- r-assessorf
- r-ataccogaps
- r-atacseqqc
- r-atacseqtfea
- r-atena
- r-autonomics (optional)
- r-baalchip
- r-badregionfinder
- r-ballgown
- r-bambu
- r-bamsignals
- r-basic4cseq
- r-basicstarrseq
- r-bayseq
- r-bbcanalyzer
- r-beadarray
- r-beat
- r-bifet
- r-bindingsitefinder
- r-biobroom (optional)
- r-bioccheck (optional)
- r-biocgenerics (optional)
- r-bioconcotk
- r-biocparallel (optional)
- r-biomvrcns
- r-bioplex
- r-biotip
- r-biovizbase
- r-biscuiteer
- r-biscuiteerdata
- r-biseq
- r-bnbc
- r-bobafit
- r-borealis
- r-bprmeth
- r-brainflowprobes
- r-branchpointer
- r-breakpointr
- r-brgenomics
- r-bsgenome
- r-bsgenomeforge
- r-bsseq
- r-bubbletree
- r-bumphunter
- r-busparse
- r-cafe
- r-cagefightr
- r-cageminer
- r-cager
- r-cardelino
- r-casper
- r-cbioportaldata
- r-cexor
- r-cfdnakit
- r-cfdnapro
- r-champ
- r-champdata
- r-chic
- r-chicago (optional)
- r-chimeraviz
- r-chipanalyser
- r-chipcomp
- r-chipenrich
- r-chipenrich.data
- r-chipexoqual
- r-chippeakanno
- r-chipqc
- r-chipseeker
- r-chipseq
- r-chipseqr
- r-chromdraw
- r-chromheatmap
- r-chromplot
- r-chromscape
- r-chromstar
- r-chromswitch
- r-chromvar
- r-cicero
- r-cindex
- r-circrnaprofiler
- r-cleanupdtseq
- r-cliprofiler
- r-cn.mops
- r-cner
- r-cnvfilter
- r-cnvgears (optional)
- r-cnvgsa
- r-cnviz
- r-cnvmetrics
- r-cnvpanelizer
- r-cnvranger
- r-cocoa
- r-cogito
- r-comapr
- r-comet
- r-comethdmr
- r-compartmap
- r-compepitools
- r-complexheatmap (optional)
- r-consensusseeker
- r-contibait
- r-conumee
- r-copynumber
- r-copynumberplots
- r-cosmic.67
- r-coverageview
- r-crisprbase
- r-crisprseek
- r-crisprseekplus
- r-crisprvariants
- r-csar
- r-csaw
- r-cssq
- r-cummerbund (optional)
- r-customprodb
- r-damefinder
- r-dasper
- r-debrowser
- r-decomptumor2sig
- r-deconvr
- r-deepbluer
- r-deepsnv
- r-deformats
- r-degnorm
- r-deltacapturec
- r-derfinder
- r-derfinderplot
- r-descan2
- r-deseq2
- r-dewseq
- r-dexseq
- r-dgeobj (check)
- r-dgeobj (optional)
- r-diffbind
- r-diffhic
- r-diffloop
- r-diffutr
- r-dmcfb
- r-dmchmm
- r-dmrcaller
- r-dmrcate
- r-dmrforpairs
- r-dmrscan
- r-dmrseq
- r-dnafusion
- r-dnashaper
- r-dominoeffect
- r-doubletrouble
- r-drimseq
- r-dropletutils
- r-easylift
- r-easyrnaseq
- r-edaseq
- r-edirquery
- r-eisar
- r-elmer
- r-elmer.data
- r-encodexplorer
- r-enhancerhomologsearch
- r-enrichedheatmap
- r-enrichtf
- r-ensembldb
- r-ensemblvep
- r-epialleler
- r-epidecoder
- r-epigenomix
- r-epigrahmm
- r-epimix
- r-epimutacions
- r-epistack
- r-epitxdb
- r-epivizr
- r-epivizrchart (optional)
- r-epivizrdata
- r-erma
- r-esatac
- r-eventpointer
- r-excluster
- r-exomecopy
- r-exomepeak2
- r-extrachips
- r-factr
- r-fastseg
- r-fccac
- r-fcscan
- r-filterffpe
- r-findit2
- r-fishpond
- r-flames
- r-fraser
- r-funchip
- r-ga4ghclient
- r-gcapc
- r-gdnax
- r-genbankr
- r-geneattribution
- r-genebreak
- r-genegeneinter
- r-generxcluster
- r-genesis
- r-genestructuretools
- r-genogam
- r-genomation
- r-genomautomorphism
- r-genomeinfodb (optional)
- r-genomeintervals
- r-genomicalignments
- r-genomicdatacommons
- r-genomicdistributions
- r-genomicfeatures
- r-genomicfiles
- r-genomicinteractionnodes
- r-genomicinteractions
- r-genomicozone
- r-genomicplot
- r-genomicscores
- r-genomicstate (optional)
- r-genomictuples
- r-genvisr
- r-ggbio
- r-ggmanh (optional)
- r-glimma (optional)
- r-gmapr
- r-gmoviz
- r-gmrp
- r-gofuncr
- r-gothic
- r-gpart
- r-granie
- r-greylistchip
- r-grohmm
- r-gsreg (optional)
- r-gtrellis
- r-guideseq
- r-guitar
- r-gviz
- r-gwascat
- r-gwastools (optional)
- r-h5vc
- r-hdf5array (optional)
- r-heatmaps
- r-helloranges
- r-hermes
- r-heron
- r-hiannotator
- r-hicbricks
- r-hiccompare
- r-hicdcplus
- r-hicdoc
- r-hicexperiment
- r-hicontacts
- r-hicool
- r-hicvenndiagram
- r-hilbertcurve
- r-hilda
- r-hireadsprocessor
- r-hitc
- r-htseqgenie
- r-hummingbird
- r-icetea
- r-ideal
- r-ideoviz
- r-idr2d
- r-igvr
- r-imas
- r-inetgrate
- r-inpas
- r-inspect
- r-intad
- r-intansv
- r-interactionset
- r-interactivecomplexheatmap (optional)
- r-interactivedisplay (optional)
- r-interest
- r-interminer
- r-ipddb
- r-iranges (optional)
- r-isoformswitchanalyzer
- r-isomirs
- r-iteremoval
- r-ivas
- r-iwtomics
- r-karyoploter
- r-katdetectr
- r-loci2path
- r-lola
- r-loomexperiment
- r-lumi
- r-m6aboost
- r-macpet
- r-madseq
- r-mafdb.1kgenomes.phase3.hs37d5
- r-mafdb.exac.r1.0.hs37d5
- r-mafdb.exac.r1.0.nontcga.hs37d5
- r-mafdb.gnomadex.r2.1.hs37d5
- r-maftools (optional)
- r-magpie
- r-mariner
- r-maser
- r-mbased
- r-mcsea
- r-mcseadata
- r-mdts
- r-meal
- r-medips
- r-megadepth
- r-melissa
- r-memes
- r-metagene
- r-metagene2
- r-metaseqr2
- r-methcp
- r-methimpute
- r-methinheritsim
- r-methreg
- r-methrix
- r-methylcc
- r-methylinheritance
- r-methylkit
- r-methylpipe
- r-methylseekr
- r-methylsig
- r-methylumi
- r-minfi
- r-minimumdistance
- r-mira
- r-mirage (optional)
- r-missmethyl
- r-mitoclone2
- r-mmappr2
- r-mmdiff2
- r-modstrings
- r-monalisa
- r-moonlight2r
- r-mosaics
- r-motif2site
- r-motifbreakr
- r-motifdb
- r-motifmatchr
- r-mousefm
- r-msa2dist
- r-msgbsr
- r-multiassayexperiment
- r-multicrispr
- r-multidataset
- r-multihiccompare
- r-mungesumstats
- r-musicatk
- r-mutationalpatterns
- r-nadfinder
- r-nanomethviz
- r-nanotator
- r-ncrnatools
- r-nearbynding
- r-netdx
- r-noisyr
- r-norce
- r-normr
- r-nucler
- r-nullranges
- r-nullrangesdata
- r-nxtirfcore
- r-oder
- r-ogre
- r-oligoclasses
- r-omadb
- r-omiccircos
- r-omicsprint (optional)
- r-onassis (optional)
- r-oncoscanr
- r-openprimer
- r-orfik
- r-organism.dplyr
- r-organismdbi
- r-outrider
- r-outsplice
- r-packfinder
- r-pagerank
- r-panelcn.mops
- r-parglms (optional)
- r-partcnv
- r-past
- r-pcaexplorer
- r-pepstat
- r-periodicdna
- r-phastcons100way.ucsc.hg19
- r-phastcons100way.ucsc.hg38
- r-phipdata
- r-pi
- r-pics
- r-ping
- r-plotgardener
- r-plotgardener (optional)
- r-plyinteractions
- r-plyranges
- r-podkat
- r-pqsfinder
- r-pram
- r-prebs
- r-precisetad
- r-precisiontrialdrawer
- r-primirtss
- r-proactiv
- r-probamr
- r-profileplyr
- r-proteodisco
- r-purecn
- r-pviz
- r-pwomics
- r-qdnaseq
- r-qpgraph
- r-qsea
- r-qtlizer
- r-quasr
- r-r3cpet
- r-r3cseq
- r-r453plus1toolbox
- r-raer
- r-raggedexperiment
- r-raids
- r-ramr
- r-rarevariantvis
- r-rcade
- r-rcas
- r-rcgh
- r-rcistarget
- r-recount
- r-recount3
- r-recountmethylation (optional)
- r-recoup
- r-regionalpcs
- r-regioner
- r-regionreport
- r-regutools
- r-remp
- r-repitools
- r-repviz
- r-resolve
- r-rfpred
- r-rgadem
- r-rgmql
- r-rgntx
- r-rgreat
- r-rhisat2
- r-ribocrypt
- r-ribodipa
- r-riboprofiling
- r-riboseqr
- r-ribosomeprofilingqc
- r-ripat
- r-rjmcmcnucleosomes
- r-rlseq
- r-rmmquant
- r-rmspc
- r-rnaeditr
- r-rnamodr
- r-rnamodr.alkanilineseq
- r-rnamodr.data (optional)
- r-rnamodr.ml
- r-rnamodr.ribomethseq
- r-rnbeads
- r-rnbeads.hg19
- r-rnbeads.hg38
- r-roar
- r-rsamtools
- r-rsvsim
- r-rtcga (optional)
- r-rtcgatoolbox
- r-rtracklayer
- r-s4vectors (optional)
- r-sarc
- r-scale4c
- r-scanmir
- r-scanmirapp
- r-scate
- r-scatedata
- r-scdblfinder
- r-scmeth
- r-scope
- r-scoreinvhap
- r-scpipe
- r-scrnaseq
- r-scrnaseqapp
- r-scruff
- r-scuttle
- r-segmenter
- r-segmentseq
- r-seq2pathway
- r-seqarchrplus
- r-seqarray
- r-seqbias
- r-seqcat
- r-seqgate
- r-seqgsea (optional)
- r-seqmagick (optional)
- r-seqpattern
- r-seqsetvis
- r-seqsqc
- r-seqvartools
- r-sesame
- r-sesamedata
- r-seurat (optional)
- r-sevenc
- r-sgseq
- r-shinyepico
- r-shortread
- r-sictools
- r-sigfuge
- r-signac
- r-signer
- r-sigspack
- r-simffpe
- r-singlecellexperiment
- r-singlemoleculefootprinting
- r-sitadela
- r-smite
- r-snapcount
- r-snphood
- r-snplocs.hsapiens.dbsnp144.grch37
- r-snplocs.hsapiens.dbsnp150.grch38
- r-soggi
- r-somaticsignatures
- r-somnibus
- r-sparsesignatures
- r-spatiallibd
- r-spatzie
- r-spectraltad
- r-spiky
- r-splatter (optional)
- r-splicewiz
- r-splicinggraphs
- r-splinter
- r-srnadiff
- r-strandcheckr
- r-structuralvariantannotation
- r-summarizedexperiment
- r-svanumt
- r-svaretro
- r-syntenet
- r-systempiper
- r-systempiperdata (optional)
- r-tadar
- r-tapseq
- r-target
- r-tcgabiolinks
- r-tcgautils
- r-tcseq
- r-tdbasedufe
- r-tdbasedufeadv
- r-tenxio
- r-terratcgadata
- r-tfarm
- r-tfbstools
- r-tfea.chip
- r-tfhaz
- r-tfutils (optional)
- r-tidybulk
- r-titancna
- r-tloh
- r-tnt
- r-tracktables
- r-trackviewer
- r-transcriptr
- r-transite
- r-transview
- r-traser
- r-trena
- r-tress
- r-tricycle
- r-triplex
- r-trna
- r-trnadbimport
- r-trnascanimport
- r-tscr
- r-tsrchitect
- r-tvtb
- r-txcutr
- r-txdbmaker
- r-tximeta
- r-ularcirc
- r-umi4cats
- r-uncoverapplib
- r-uniquorn
- r-universalmotif (optional)
- r-updateobject (optional)
- r-valr (optional)
- r-vanillaice
- r-varcon
- r-variantannotation
- r-variantexperiment
- r-variantfiltering
- r-varianttools
- r-vasp
- r-vcfarray
- r-vplotr
- r-vtpnet
- r-vulcan
- r-wavcluster
- r-wiggleplotr
- r-xcore
- r-xnastring
- r-xtrasnplocs.hsapiens.dbsnp144.grch37
- r-yapsa
- r-zygositypredictor
Latest Comments
dviktor commented on 2022-01-17 20:14 (UTC)
I'm leaving maintenance and support for this package in favor of new repository. You can install pre-built packages from my repo
vejnar commented on 2019-02-15 20:24 (UTC) (edited on 2019-02-15 20:35 (UTC) by vejnar)
Building is failing. GenomicRanges depends on XVector. Please add r-xvector in depencencies.