Package Details: scotch 7.0.6-1

Git Clone URL: https://aur.archlinux.org/scotch.git (read-only, click to copy)
Package Base: scotch
Description: Software package and libraries for graph, mesh and hypergraph partitioning, static mapping, and sparse matrix block ordering
Upstream URL: https://gitlab.inria.fr/scotch/scotch
Licenses: CeCILL-C
Conflicts: ptscotch-openmpi, scotch_esmumps, scotch_esmumps5
Provides: ptscotch, ptscotch-openmpi, scotch_esmumps, scotch_ptesmumps
Submitter: None
Maintainer: ioquatix (MartinDiehl)
Last Packager: MartinDiehl
Votes: 41
Popularity: 0.78
First Submitted: 2006-11-07 17:51 (UTC)
Last Updated: 2024-12-06 16:25 (UTC)

Latest Comments

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sigvald commented on 2018-02-19 12:46 (UTC) (edited on 2018-02-19 12:48 (UTC) by sigvald)

It seems that this error is because the source of the .tar.gz file used to be on an http:// adress but now it is forwarded to an https:// adress (but otherwise the same adress) and my system cannot verify the validity of the certificate. Of course, neither can I, but if you decide to "trust" the source anyway, you can download the .tar.gz-file to your clone of the scotch folder and run makepkg -sri again. Since the source file is already there it won't use curl to try to download it. That gets us one step further, but now I get this one:

mpirun -n 4 ./test_scotch_dgraph_check data/bump.grf
--------------------------------------------------------------------------
There are not enough slots available in the system to satisfy the 4 slots
that were requested by the application:
  ./test_scotch_dgraph_check

Either request fewer slots for your application, or make more slots available
for use.
--------------------------------------------------------------------------
make[2]: *** [Makefile:258: check_scotch_dgraph_check] Error 1
make[2]: Leaving directory '/home/sigvald/Downloads/scotch/src/scotch_6.0.4/src/check'
make[1]: *** [Makefile:68: ptcheck] Error 2
make[1]: Leaving directory '/home/sigvald/Downloads/scotch/src/scotch_6.0.4/src/check'
make: *** [Makefile:106: ptcheck] Error 2
==> ERROR: A failure occurred in check().
    Aborting...

I find this a bit strange since I don't normally have any problem running mpirun with 4 processes.

ioquatix commented on 2018-02-19 12:38 (UTC)

I get the same problem now. Is there something wrong with the SSL on that website?

sigvald commented on 2018-02-19 12:32 (UTC) (edited on 2018-02-19 12:46 (UTC) by sigvald)

I get the following:

==> Making package: scotch 6.0.4-3 (Mon Feb 19 13:31:18 CET 2018)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
  -> Downloading scotch_6.0.4.tar.gz...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   360  100   360    0     0   1592      0 --:--:-- --:--:-- --:--:--  1592
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (60) SSL certificate problem: unable to get local issuer certificate
More details here: <https://curl.haxx.se/docs/sslcerts.html>

curl failed to verify the legitimacy of the server and therefore could not
establish a secure connection to it. To learn more about this situation and
how to fix it, please visit the web page mentioned above.
==> ERROR: Failure while downloading <http://gforge.inria.fr/frs/download.php/file/34618/scotch_6.0.4.tar.gz>
    Aborting...

zoidberg commented on 2018-01-07 08:03 (UTC) (edited on 2018-01-07 08:05 (UTC) by zoidberg)

I am unable to build this package on an up-to-date Arch system. I have pasted the last few lines of the build output below.

make[2]: Entering directory '/home/kishore/.cache/pacaur/scotch/src/scotch_6.0.4/src/check'
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_common_random.c -o test_common_random -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_common_thread.c -o test_common_thread -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_strat_seq.c -o test_strat_seq -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_coarsen.c -o test_scotch_graph_coarsen -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_coarsen_build.c -o test_scotch_graph_coarsen_build -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_color.c -o test_scotch_graph_color -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_map.c -o test_scotch_graph_map -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_map_copy.c -o test_scotch_graph_map_copy -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_order.c -o test_scotch_graph_order -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
gcc -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -fPIC -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_FILE_COMPRESS_BZ2 -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME  -Drestrict=__restrict -DIDXSIZE64 -I../../include -L../../lib test_scotch_graph_part_ovl.c -o test_scotch_graph_part_ovl -lscotch -lscotcherrexit -lz -lbz2 -lm -lrt -pthread
../../bin/gord data/bump.grf /dev/null -vt
../../bin/gord: symbol lookup error: ../../bin/gord: undefined symbol: fileBlockInit
make[2]: *** [Makefile:152: check_prog_gord] Error 127
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '/home/kishore/.cache/pacaur/scotch/src/scotch_6.0.4/src/check'
make[1]: *** [Makefile:65: check] Error 2
make[1]: Leaving directory '/home/kishore/.cache/pacaur/scotch/src/scotch_6.0.4/src/check'
make: *** [Makefile:103: check] Error 2
==> ERROR: A failure occurred in check().
    Aborting...

AsmundEr commented on 2017-04-04 06:53 (UTC)

Further investigation revealed this was just me being stupid and running out of space in /tmp, so the check() function couldn't create /tmp/rand.dat. Sorry about the noise, everything seems to work fine now.

ioquatix commented on 2017-04-03 11:30 (UTC)

Can you try cloning the repo for this package and building somewhere other than tmp?

AsmundEr commented on 2017-04-03 11:29 (UTC)

To be specific, I am installing using yaourt, and the check() function failed saying ./test_common_random /tmp/rand.dat 0 ERROR: main: cannot replay random sequence Is this just a file it can't find during testing?

ioquatix commented on 2017-04-03 11:28 (UTC)

What does the check function do? I know the maintainer of scotch was receptive to improvements in the build system. I already pointed him at all the hacks in the PKGBUILD...

AsmundEr commented on 2017-04-03 11:27 (UTC)

I may have just cracked the riddle: when it failed for me, it first failed in the check() function saying "cannot replay random sequence". So I commented that out, and restarted the build, upon which it gave the error message mentioned on 2017-03-29. But now I tried a fresh build where I commented the check() out before the first build, and it now works fine!

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