fastuniq
|
1.1-1 |
0 |
0.00
|
ultrafast de novo tool for removal of duplicates in paired short DNA sequence reads in FASTQ format https://doi.org/10.1371/journal.pone.0052249 |
malacology
|
2024-02-14 18:01 (UTC) |
fastqc
|
0.12.1-4 |
5 |
0.00
|
A quality control tool for high throughput sequence data. |
malacology
|
2023-06-23 18:01 (UTC) |
fastp
|
0.23.4-3 |
0 |
0.00
|
a tool designed to provide fast all-in-one preprocessing for FastQ files, developed in C++ with multithreading supported to afford high performance |
malacology
|
2023-07-09 10:10 (UTC) |
fastme
|
2.1.6.3-1 |
0 |
0.00
|
a comprehensive, accurate and fast distance-based phylogeny inference program https://doi.org/10.1093/molbev/msv150 |
malacology
|
2023-10-11 09:46 (UTC) |
fastdnaml
|
1.2.2-0 |
0 |
0.00
|
A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood https://doi.org/10.1093/bioinformatics/10.1.41 |
malacology
|
2024-02-05 02:14 (UTC) |
exonerate
|
2.4.0-2 |
3 |
0.00
|
A general purpose tool for biological sequence comparison |
malacology
|
2024-02-13 04:43 (UTC) |
examl-mpi
|
3.0.22-3 |
1 |
0.00
|
Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 |
malacology
|
2022-08-29 03:55 (UTC) |
examl
|
3.0.22-3 |
1 |
0.00
|
Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 |
malacology
|
2022-08-29 03:55 (UTC) |
exabayes
|
1.5.1-2 |
1 |
0.00
|
software package for Bayesian tree inference https://doi.org/10.1093/molbev/msu236 |
malacology
|
2022-08-30 12:02 (UTC) |
evs
|
20161229.215801-3 |
0 |
0.00
|
A tool for phylogenetic biogeography |
malacology
|
2022-08-29 22:40 (UTC) |
ev-view
|
20160216.161212-2 |
0 |
0.00
|
A tool for visualization of evs results. |
malacology
|
2022-08-29 22:40 (UTC) |
ekho
|
8.9.3-1 |
11 |
0.00
|
Multilingual text-to-speech (TTS) software for Cantonese, Mandarin, Toisanese, Zhaoan Hakka, Tibetan, Ngangien, Korean and English |
malacology
|
2023-06-25 09:48 (UTC) |
easycodeml
|
1.41-1 |
1 |
0.00
|
A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015 |
malacology
|
2023-05-07 12:01 (UTC) |
dnastar7activated
|
7.1.0-1 |
0 |
0.00
|
leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder |
malacology
|
2021-05-13 10:00 (UTC) |
dnarates
|
1.1.0-0 |
0 |
0.00
|
estimating site-specific nucleotide substitution rates by maximum likelihood https://doi.org/10.1093/nar/22.17.3485 |
malacology
|
2024-02-04 17:28 (UTC) |
dbasic
|
0.92.0-1 |
0 |
0.00
|
Modern implementation of the original Dartmouth BASIC compilers in the D programming language |
malacology
|
2023-10-20 09:41 (UTC) |
dambe
|
7-1 |
0 |
0.00
|
New and improved tools for data analysis in molecular biology and evolution |
malacology
|
2021-05-11 15:48 (UTC) |
cufflinks
|
2.2.2.20190706.162801-2 |
2 |
0.00
|
Transcriptome assembly and differential expression analysis for RNA-Seq. |
malacology
|
2023-06-01 21:03 (UTC) |
consel
|
2011.05.12-0 |
0 |
0.00
|
Assessing the confidence of phylogenetic tree selection https://doi.org/10.1093/bioinformatics/17.12.1246 |
malacology
|
2023-02-10 18:37 (UTC) |
coalgen
|
1.10.4-0 |
1 |
0.00
|
BEAST Coalescent Tree Simulator https://doi.org/10.1186/1471-2148-7-214 |
malacology
|
2023-05-07 11:21 (UTC) |
classic-delta
|
2.25g-0 |
0 |
0.00
|
An Open Source System for Processing Taxonomic Descriptions https://doi.org/10.2307/1219595 |
malacology
|
2022-11-29 15:54 (UTC) |
clann
|
194f8aa-1 |
0 |
0.00
|
constructing consensus trees and supertrees from multiple source trees https://doi.org/10.1093/bioinformatics/bti020 |
malacology
|
2023-07-29 12:02 (UTC) |
bucky
|
1.4.4-4 |
0 |
0.00
|
Bayesian Untangling of Concordance Knots https://doi.org/10.1093/bioinformatics/btq539 |
malacology
|
2022-08-28 14:32 (UTC) |
btllib
|
1.7.2-1 |
0 |
0.00
|
Bioinformatics Technology Lab common code library https://doi.org/10.21105/joss.04720 |
malacology
|
2024-04-09 00:03 (UTC) |
bionj
|
1997-1 |
0 |
0.00
|
an improved version of the NJ algorithm based on a simple model of sequence data |
malacology
|
2022-06-01 14:03 (UTC) |
biobambam
|
2.0.185_release_20221211202123-1 |
2 |
0.00
|
BAM file pre-processing utilities for bioinformatics. |
malacology
|
2022-12-12 00:13 (UTC) |
bedtools
|
1:2.31.1-1 |
16 |
0.00
|
powerful toolset for genome arithmetic |
malacology
|
2024-01-16 20:38 (UTC) |
bedops
|
2.4.41-2 |
1 |
0.00
|
Highly scalable genomic feature operations. https://doi.org/10.1093/bioinformatics/bts277 |
malacology
|
2023-03-03 07:06 (UTC) |
beastgen
|
1.10.4-0 |
1 |
0.00
|
Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 |
malacology
|
2023-05-07 11:21 (UTC) |
beast2
|
2.7.6-1 |
1 |
0.00
|
Bayesian Evolutionary Analysis by Sampling Trees. https://doi.org/10.1371/journal.pcbi.1003537 |
malacology
|
2024-02-03 07:52 (UTC) |
beast
|
1.10.4-0 |
1 |
0.00
|
Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 |
malacology
|
2023-05-07 11:21 (UTC) |
beagle-lib-opencl
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with opencl) |
malacology
|
2023-10-13 18:05 (UTC) |
beagle-lib-cuda
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda) |
malacology
|
2024-01-17 06:05 (UTC) |
beagle-lib-all
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda and opencl) |
malacology
|
2024-01-17 06:02 (UTC) |
beagle-lib
|
4.0.1-1 |
5 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees |
malacology
|
2023-10-13 18:06 (UTC) |
bbmap
|
39.06-3 |
1 |
0.00
|
A short read aligner and other bioinformatic tools |
malacology
|
2024-02-14 11:06 (UTC) |
bayestraits-mpi
|
4.1.2-1 |
0 |
0.00
|
A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available |
malacology
|
2024-05-16 18:03 (UTC) |
bayestraits
|
4.1.2-1 |
0 |
0.00
|
A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available |
malacology
|
2024-05-16 18:03 (UTC) |
bayarea
|
1.0.3-1 |
0 |
0.00
|
Bayesian inference of historical biogeography for many discrete areas https://doi.org/10.1093/sysbio/syt040 |
malacology
|
2023-02-10 18:50 (UTC) |
bamm
|
2.5.0-1 |
0 |
0.00
|
A program for multimodel inference on speciation and trait evolution https://doi.org/10.1038/ncomms2958 |
malacology
|
2022-11-02 14:23 (UTC) |
avogadroapp
|
1.99.0-2 |
7 |
0.04
|
An advanced molecular editor |
malacology
|
2024-02-12 17:24 (UTC) |
avida
|
2.14.0-2 |
6 |
0.00
|
A software platform to study evolution of digital organisms |
malacology
|
2022-08-28 22:17 (UTC) |
artemis
|
18.2.0-6 |
3 |
0.00
|
A genome viewer and annotation tool that visualizes biological sequence features |
malacology
|
2023-05-14 12:14 (UTC) |
arlsumstat
|
3.5.2.2-5 |
0 |
0.00
|
a modified version of Arlequin for computing summary statistics |
malacology
|
2022-11-27 12:02 (UTC) |
arlequin-extra
|
3.5.2.2-5 |
0 |
0.00
|
extra files for arlequin |
malacology
|
2022-11-27 12:02 (UTC) |
arlecore
|
3.5.2.2-5 |
0 |
0.00
|
console version of of Arlequin: An Integrated Software for Population Genetics Data Analysis |
malacology
|
2022-11-27 12:02 (UTC) |
archrepo2-git
|
2:0.5.r23.g954068b-2 |
1 |
0.00
|
Arch Linux repository manager |
malacology
|
2023-08-27 03:15 (UTC) |
aliview
|
1.28-3 |
1 |
0.32
|
Software for aligning viewing and editing dna/aminoacid sequences https://doi.org/10.1093/bioinformatics/btu531 |
malacology
|
2023-04-25 17:00 (UTC) |
abyss
|
2.3.7-2 |
1 |
0.00
|
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler |
malacology
|
2023-06-02 00:37 (UTC) |
abgd
|
2011_06_10-1 |
0 |
0.00
|
Automatic Barcode Gap Discovery for primary species delimitation https://doi.org/10.1111/j.1365-294x.2011.05239.x |
malacology
|
2023-01-18 19:34 (UTC) |