|
python-pyswrd
|
0.2.0-1 |
0 |
0.00
|
Cython bindings and Python interface to SWORD, a method for query-database alignment. |
althonos
|
2024-05-15 09:36 (UTC) |
|
stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
|
edlib
|
1.2.7-5 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2024-05-06 14:57 (UTC) |
|
python-pyfamsa
|
0.4.0-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-05-06 14:44 (UTC) |
|
r-ncgtw
|
1.18.0-1 |
0 |
0.00
|
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection |
BioArchLinuxBot
|
2024-05-03 13:38 (UTC) |
|
r-girafe
|
1.56.0-1 |
0 |
0.00
|
Genome Intervals and Read Alignments for Functional Exploration |
BioArchLinuxBot
|
2024-05-03 01:20 (UTC) |
|
r-roar
|
1.40.0-1 |
0 |
0.00
|
Identify differential APA usage from RNA-seq alignments |
BioArchLinuxBot
|
2024-05-03 00:55 (UTC) |
|
r-rprimer
|
1.8.0-1 |
0 |
0.00
|
Design Degenerate Oligos from a Multiple DNA Sequence Alignment |
pekkarr
|
2024-05-02 18:38 (UTC) |
|
r-pwalign
|
1.0.0-1 |
0 |
0.00
|
Perform pairwise sequence alignments |
pekkarr
|
2024-05-02 11:44 (UTC) |
|
r-ompbam
|
1.8.0-1 |
0 |
0.00
|
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files |
pekkarr
|
2024-05-02 05:08 (UTC) |
|
r-graphalignment
|
1.68.0-1 |
0 |
0.00
|
GraphAlignment |
BioArchLinuxBot
|
2024-05-02 03:53 (UTC) |
|
r-seqlogo
|
1.70.0-1 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-05-02 03:17 (UTC) |
|
r-ggmsa
|
1.10.0-1 |
0 |
0.00
|
Plot Multiple Sequence Alignment using 'ggplot2' |
BioArchLinuxBot
|
2024-05-02 01:55 (UTC) |
|
r-odseq
|
1.32.0-1 |
0 |
0.00
|
Outlier detection in multiple sequence alignments |
BioArchLinuxBot
|
2024-05-02 01:53 (UTC) |
|
r-h5vc
|
2.38.0-1 |
0 |
0.00
|
Managing alignment tallies using a hdf5 backend |
BioArchLinuxBot
|
2024-05-02 00:42 (UTC) |
|
r-muscle
|
3.46.0-1 |
0 |
0.00
|
Multiple Sequence Alignment with MUSCLE |
BioArchLinuxBot
|
2024-05-02 00:21 (UTC) |
|
r-msa
|
1.36.0-1 |
0 |
0.00
|
Multiple Sequence Alignment |
BioArchLinuxBot
|
2024-05-02 00:12 (UTC) |
|
r-dialignr
|
2.12.0-1 |
0 |
0.00
|
Dynamic Programming Based Alignment of MS2 Chromatograms |
BioArchLinuxBot
|
2024-05-01 22:44 (UTC) |
|
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
|
wfa2-lib
|
2.3.5-1 |
0 |
0.00
|
Wavefront alignment algorithm library v2 |
BioArchLinuxBot
|
2024-04-20 12:01 (UTC) |
|
python-pysam
|
0.22.0-1 |
12 |
0.49
|
Python interface for the SAM/BAM sequence alignment and mapping format |
oldherl
|
2024-04-16 07:41 (UTC) |
|
r-genomicalignments
|
1.38.2-1 |
0 |
0.00
|
Representation and manipulation of short genomic alignments |
greyltc
|
2024-04-08 14:55 (UTC) |
|
python-tweakwcs
|
0.8.7-1 |
0 |
0.00
|
A package for correcting alignment errors in WCS objects |
Universebenzene
|
2024-04-01 07:52 (UTC) |
|
salmon
|
1.10.3-1 |
0 |
0.00
|
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments |
kbipinkumar
|
2024-03-16 00:06 (UTC) |
|
r-lowmaca
|
1.28.0-3 |
0 |
0.00
|
Low frequency Mutation Analysis via Consensus Alignment |
BioArchLinuxBot
|
2024-02-15 18:05 (UTC) |
|
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
|
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
|
biodiff-bin
|
1.1.0-1 |
0 |
0.00
|
Hex diff viewer using alignment algorithms from biology |
icecamphor
|
2023-11-23 18:10 (UTC) |
|
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |
|
spaln
|
3.0.2-2 |
0 |
0.00
|
Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA |
kbipinkumar
|
2023-11-17 07:09 (UTC) |
|
r-rsamtools
|
2.18.0-1 |
0 |
0.00
|
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
greyltc
|
2023-11-02 10:59 (UTC) |
|
r-funchip
|
1.28.0-1 |
0 |
0.00
|
Clustering and Alignment of ChIP-Seq peaks based on their shapes |
BioArchLinuxBot
|
2023-10-27 07:37 (UTC) |
|
python-spacy-alignments
|
0.9.1-1 |
2 |
0.08
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |
|
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
|
python-face-alignment
|
1.4.1-1 |
2 |
0.00
|
Detect facial landmarks from Python using an accurate face alignment network |
orphan
|
2023-09-17 21:52 (UTC) |
|
tcoffee
|
13.46.0.919e8c6b-1 |
6 |
0.00
|
An alignment tool for Protein, DNA and RNA sequences |
mschu
|
2023-08-15 19:00 (UTC) |
|
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
|
python-pytrimal
|
0.7.0-1 |
0 |
0.00
|
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
althonos
|
2023-07-21 19:19 (UTC) |
|
r-scalign
|
1.12.0-4 |
0 |
0.00
|
An alignment and integration method for single cell genomics |
BioArchLinuxBot
|
2023-04-29 05:24 (UTC) |
|
r-balcony
|
0.2.10-4 |
0 |
0.00
|
Better ALignment CONsensus analYsis |
BioArchLinuxBot
|
2023-04-22 23:02 (UTC) |
|
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
r-speaq
|
2.7.0-6 |
1 |
0.00
|
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
BioArchLinuxBot
|
2022-11-26 15:40 (UTC) |
|
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
|
r-egg
|
0.4.5-7 |
0 |
0.00
|
Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |
BioArchLinuxBot
|
2022-10-18 12:52 (UTC) |
|
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
|
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
|
r-msar
|
0.6.0-2 |
0 |
0.00
|
Multiple Sequence Alignment for R Shiny |
BioArchLinuxBot
|
2022-06-06 08:17 (UTC) |
|
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
|
justify-git
|
r17.5ad543a-1 |
0 |
0.00
|
Simple text alignment tool that supports left/right/center/fill justify alignment |
xfnw
|
2022-04-05 00:32 (UTC) |