|
rasmol-gtk
|
2.7.5.2-2 |
2 |
0.00
|
A program for molecular graphics visualisation (aka openrasmol) |
leepesjee
|
2015-12-03 00:48 (UTC) |
|
tachyon-opengl
|
0.99b6-3 |
0 |
0.00
|
Parallel ray tracer (used as part of Visual Molecular Dynamics), OpenGL-enabled |
orphan
|
2016-02-17 21:30 (UTC) |
|
libmsym-git
|
0.2.3.r190.c994703-1 |
6 |
0.00
|
A library for handling molecular point group symmetry, with a Python interface (git version) |
berquist
|
2018-04-06 18:34 (UTC) |
|
mgltools-bin
|
2015.01.22-2 |
0 |
0.00
|
Visualization and analysis of molecular structures; includes AutoDockTools, Vision, AutoDock 4.2.6 and PythonMoleculeViewer (includes Python 2.7) |
nicman23
|
2018-12-15 10:34 (UTC) |
|
gromacs-4.6-complete
|
4.6.7-7 |
1 |
0.00
|
A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. |
hseara
|
2019-01-27 19:20 (UTC) |
|
espressomd-git
|
3.4.dev.r13633.ff32b09e5-1 |
0 |
0.00
|
ESPResSo is a software package for performing and analyzing Molecular Dynamics simulations. |
orphan
|
2019-09-07 20:20 (UTC) |
|
martinize-git
|
v0.3.1.r8.2a50f80-1 |
1 |
0.00
|
Describe and apply transformation on molecular structures and topologies |
Ezmagon
|
2019-12-10 11:45 (UTC) |
|
molecular-workbench
|
3.0.0-4 |
0 |
0.00
|
Modeling tool for designing and conducting computational experiments across science. |
PrinceMachiavell
|
2019-12-13 21:28 (UTC) |
|
openbabel2
|
2.4.1-1 |
0 |
0.00
|
A library designed to interconvert between many file formats used in molecular modeling and computational chemistry (libs only) |
orphan
|
2020-02-14 15:11 (UTC) |
|
iqmol
|
2.14-1 |
1 |
0.00
|
A molecular editor and visualization package with Q-Chem integration |
berquist
|
2020-03-22 17:24 (UTC) |
|
openbabel-git
|
3.0.90.r5774.686ee22f2-1 |
2 |
0.00
|
A library designed to interconvert between many file formats used in molecular modeling and computational chemistry (git version, builds Python bindings) |
berquist
|
2020-03-22 18:02 (UTC) |
|
emboss
|
6.6.0-3 |
20 |
0.00
|
A collection of molecular biology applications |
mschu
|
2020-05-11 20:54 (UTC) |
|
xcrysden
|
1.6.2-2 |
6 |
0.00
|
crystalline and molecular structure visualisation program |
specter119
|
2020-06-03 08:59 (UTC) |
|
dseams-git
|
1.0.0.r14.g333cc82-1 |
1 |
0.00
|
Deferred Structural Elucidation Analysis for Molecular Simulations |
orphan
|
2020-06-20 16:40 (UTC) |
|
iboview
|
20150427-1 |
1 |
0.01
|
A program for analyzing molecular electronic structure, based on Intrinsic Atomic Orbitals (IAOs). |
orphan
|
2020-09-26 13:50 (UTC) |
|
namd
|
2.14-3 |
2 |
0.00
|
Scalable molecular dynamic engine |
orphan
|
2020-10-02 17:06 (UTC) |
|
mingw-w64-pteros
|
2.8.r125.g16923940-1 |
0 |
0.00
|
C++ library for molecular modeling. (mingw-w64) |
orphan
|
2020-11-14 23:55 (UTC) |
|
dseams
|
1.0.1-1 |
0 |
0.00
|
Deferred Structural Elucidation Analysis for Molecular Simulations |
orphan
|
2020-12-02 01:33 (UTC) |
|
kim-api
|
2.2.1-1 |
2 |
0.00
|
Online framework for reliable, reproducible and portable molecular simulations |
dschopf
|
2020-12-29 08:54 (UTC) |
|
blender-plugin-molecular
|
1.1.1_r249.e4ef6a2-2 |
2 |
0.00
|
Blender addon for advance particle physics, multithreaded. |
bartus
|
2021-01-12 18:44 (UTC) |
|
python-mmtf
|
1.1.2-1 |
0 |
0.00
|
The macromolecular transmission format (MMTF) is a binary encoding of biological structures. |
hseara
|
2021-01-20 21:26 (UTC) |
|
namd-multicore-cuda-bin
|
2.14-1 |
1 |
0.00
|
Parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. |
willemsk
|
2021-02-10 09:03 (UTC) |
|
pteros
|
2.8.r144.g2965c2b0-1 |
0 |
0.00
|
C++ library for molecular modeling. |
burning_daylight
|
2021-03-24 13:34 (UTC) |
|
yaehmop
|
3.1.0b2-4 |
0 |
0.00
|
Yet Another extended Huckel Molecular Orbital Package (YAeHMOP) |
lantw44
|
2021-04-10 17:53 (UTC) |
|
dambe
|
7-1 |
0 |
0.00
|
New and improved tools for data analysis in molecular biology and evolution |
malacology
|
2021-05-11 15:48 (UTC) |
|
tempest-bin
|
1.5.3-1 |
0 |
0.00
|
a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies |
malacology
|
2021-05-27 05:31 (UTC) |
|
megax-bin
|
10.2.6-1 |
2 |
0.32
|
Molecular Evolutionary Genetics Analysis |
malacology
|
2021-06-12 01:37 (UTC) |
|
gromacs-2020-complete
|
2020.6-1 |
0 |
0.00
|
A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. |
hseara
|
2021-09-01 10:29 (UTC) |
|
python-mdtraj
|
1.9.7-1 |
4 |
0.00
|
A modern, open library for the analysis of molecular dynamics trajectories |
hseara
|
2022-01-06 12:01 (UTC) |
|
vmd-molfile-plugins
|
1.9.4a55-1 |
0 |
0.00
|
Visual Molecular Dynamics - molfile plugins |
orphan
|
2022-01-21 05:59 (UTC) |
|
ucsf-chimera
|
1.16-1 |
15 |
0.00
|
Extensible molecular modeling system |
Athemis
|
2022-03-14 11:11 (UTC) |
|
fftool-git
|
r175.0bf8a80-1 |
0 |
0.00
|
Tool to build force field input files for molecular simulation |
IslandC0der
|
2022-04-17 00:19 (UTC) |
|
packmol
|
1:20.3.5-1 |
1 |
0.00
|
Creates an initial point for molecular dynamics simulations by packing molecules in defined regions of space. |
IslandC0der
|
2022-04-17 00:48 (UTC) |
|
dl_poly-git
|
r60.f2712ca-2 |
0 |
0.00
|
General purpose molecular dynamics simulation package |
IslandC0der
|
2022-04-28 19:41 (UTC) |
|
python-chemview-git
|
0.7.r10.g2c9768d-1 |
0 |
0.00
|
An interactive molecular viewer for the IPython notebook (git version) |
orphan
|
2022-07-30 18:33 (UTC) |
|
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
|
apbs
|
3.4.1-2 |
3 |
0.00
|
Software for biomolecular electrostatics and solvation calculations |
willemsk
|
2022-12-01 08:45 (UTC) |
|
mopac
|
22.0.6-1 |
0 |
0.00
|
Molecular Orbital PACkage |
Tenshi65535
|
2022-12-24 02:24 (UTC) |
|
mmdb2
|
2.0.22-1 |
0 |
0.00
|
A C++ toolkit for working with macromolecular coordinate files |
Athemis
|
2023-02-14 14:24 (UTC) |
|
garlic
|
1.6-13 |
3 |
0.00
|
Molecular visualization program |
malacology
|
2023-04-04 19:03 (UTC) |
|
phylosuite
|
1.2.3-2 |
0 |
0.00
|
an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096 |
malacology
|
2023-04-04 19:09 (UTC) |
|
mega
|
11.0.13-3 |
1 |
0.00
|
Molecular Evolutionary Genetics Analysis. https://doi.org/10.1093/molbev/msy096 |
malacology
|
2023-04-04 19:30 (UTC) |
|
vmd-bin
|
1.9.4a57-1 |
0 |
0.00
|
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting |
tzok
|
2023-04-17 07:12 (UTC) |
|
r-nglviewer
|
1.3.1-1 |
0 |
0.00
|
Interactive 3D Visualization of Molecular Structures |
BioArchLinuxBot
|
2023-04-29 04:46 (UTC) |
|
r-tcgabiolinksgui
|
1.23.0-4 |
0 |
0.00
|
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data" |
BioArchLinuxBot
|
2023-04-29 07:09 (UTC) |
|
openmm
|
8.0.0-1 |
0 |
0.00
|
Toolkit for molecular simulation using high performance GPU code |
hseara
|
2023-05-17 13:53 (UTC) |
|
plumed
|
2.8.2-1 |
3 |
0.00
|
An open source plugin for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. |
hseara
|
2023-05-19 09:30 (UTC) |
|
gromacs-plumed
|
2022.5-1 |
2 |
0.00
|
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. (Plumed patched) |
hseara
|
2023-05-19 10:08 (UTC) |
|
plumed-mpi
|
2.8.2-1 |
1 |
0.00
|
An open source plugin for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines (with MPI support) |
Tenshi65535
|
2023-05-23 01:24 (UTC) |
|
vmd-src
|
1.9.4a57-3 |
2 |
0.00
|
Visual Molecular Dynamics |
a.kudelin
|
2023-06-01 08:51 (UTC) |