|
adapterremoval
|
2.3.3-2 |
0 |
0.00
|
Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end |
kbipinkumar
|
2023-04-02 06:02 (UTC) |
|
alevin-fry
|
0.9.0-1 |
0 |
0.00
|
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data |
kbipinkumar
|
2024-03-09 00:03 (UTC) |
|
bcalm-git
|
2.2.0.r49.g890ea4a-1 |
1 |
0.00
|
constructs compacted de Bruijn graph from sequencing data |
Piezo
|
2019-12-01 14:50 (UTC) |
|
beads
|
1.1-3 |
0 |
0.00
|
Bias Elimination Algorithm for Deep Sequencing. |
orphan
|
2023-01-02 17:44 (UTC) |
|
big-yotta
|
5.3-1 |
0 |
0.00
|
Sequencing.com utility for uploading large genetic data files |
alex.henrie
|
2021-03-29 02:16 (UTC) |
|
bowtie2-bin
|
2.5.4-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
Chocobo1
|
2024-05-17 04:14 (UTC) |
|
bowtie2-git
|
2.5.3.r0.ga43fa6f-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
a821
|
2024-03-21 09:27 (UTC) |
|
canu
|
2.2-2 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2024-06-05 12:21 (UTC) |
|
canu-bin
|
2.2-2 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2022-05-06 13:47 (UTC) |
|
canu-git
|
2.2.r162.gc61ebbb7a-1 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2024-06-05 12:21 (UTC) |
|
chopper
|
0.8.0-1 |
0 |
0.00
|
Rust implementation of NanoFilt+NanoLyse intended for long read sequencing |
kbipinkumar
|
2024-04-20 00:02 (UTC) |
|
cutadapt
|
4.8-1 |
0 |
0.00
|
Remove adapter sequences from high-throughput sequencing reads. doi:10.14806/ej.17.1.200 |
kbipinkumar
|
2024-04-12 18:21 (UTC) |
|
cutepeaks
|
0.2.3-1 |
0 |
0.00
|
A simple viewer for Sanger sequencing files |
Stunts
|
2022-02-08 01:37 (UTC) |
|
cutepeaks-git
|
0.2.3-1 |
1 |
0.00
|
A simple viewer for Sanger sequencing files |
Direct-A
|
2021-08-23 03:37 (UTC) |
|
expressionmatrix2-git
|
0.4-3 |
0 |
0.00
|
Software for exploration of gene expression data from single-cell RNA sequencing. |
iosonofabio
|
2018-03-01 18:25 (UTC) |
|
flair
|
2.0.0-1 |
0 |
0.00
|
Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads |
kbipinkumar
|
2023-06-14 00:01 (UTC) |
|
flexbar
|
3.5.0-1 |
1 |
0.00
|
flexible barcode and adapter removal for sequencing platforms |
kleintux
|
2021-09-17 10:33 (UTC) |
|
freec
|
11.6-2 |
0 |
0.00
|
Copy number and genotype annotation in whole genome and whole exome sequencing data |
malacology
|
2022-04-17 18:01 (UTC) |
|
gatk-bin
|
4.5.0.0-1 |
1 |
0.00
|
Variant discovery in high-throughput bioinformatics sequencing data |
46620
|
2023-12-14 18:57 (UTC) |
|
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
|
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
|
htscodecs
|
1.6.0-1 |
1 |
0.00
|
Custom compression for sequencing formats, e.g. CRAM |
mschu
|
2023-12-07 16:37 (UTC) |
|
htslib-git
|
1.17.r16.g93434e04-1 |
0 |
0.00
|
C library for high-throughput sequencing data formats |
Chocobo1
|
2023-04-05 21:17 (UTC) |
|
libsequoia-git
|
r157.81b0e8f-1 |
0 |
0.00
|
A library for loop-based MIDI step sequencing for JACK applications |
SpotlightKid
|
2023-04-29 01:10 (UTC) |
|
lighter
|
1.1.2-1 |
0 |
0.00
|
Fast and memory-efficient sequencing error corrector |
PumpkinCheshire
|
2021-07-24 08:21 (UTC) |
|
mosdepth
|
0.3.4-1 |
1 |
0.00
|
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing |
meanjollies
|
2023-06-26 02:57 (UTC) |
|
musket
|
1.1-2 |
1 |
0.00
|
a parallel short-read error corrector for Illumina sequencing |
kleintux
|
2022-01-22 20:15 (UTC) |
|
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
|
nanopolish
|
0.14.0-1 |
0 |
0.00
|
Provide signal-level analysis of Oxford Nanopore sequencing data |
Chocobo1
|
2022-08-28 14:25 (UTC) |
|
nanopolish-git
|
0.14.0.r10.g21c75db-1 |
0 |
0.00
|
Provide signal-level analysis of Oxford Nanopore sequencing data |
Chocobo1
|
2023-04-05 21:29 (UTC) |
|
nanoqc
|
0.9.4-1 |
0 |
0.00
|
Create fastQC-like plots for Oxford Nanopore sequencing data |
kbipinkumar
|
2023-08-06 05:29 (UTC) |
|
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
|
picard-tools
|
3.1.1-1 |
8 |
0.00
|
set of tools for working with next generation sequencing data in the BAM format |
malacology
|
2023-11-15 00:03 (UTC) |
|
preseq
|
3.2.0-3 |
0 |
0.00
|
A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. |
malacology
|
2023-07-26 18:17 (UTC) |
|
python-htseq
|
0.11.3-1 |
0 |
0.00
|
library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments |
greyltc
|
2020-11-01 15:10 (UTC) |
|
r-ace
|
1.22.0-1 |
0 |
0.00
|
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing |
BioArchLinuxBot
|
2024-05-02 02:30 (UTC) |
|
r-aneufinder
|
1.32.0-1 |
0 |
0.00
|
Analysis of Copy Number Variation in Single-Cell-Sequencing Data |
BioArchLinuxBot
|
2024-05-02 23:40 (UTC) |
|
r-bader
|
1.42.0-1 |
0 |
0.00
|
Bayesian Analysis of Differential Expression in RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-02 03:52 (UTC) |
|
r-basics
|
2.16.0-1 |
0 |
0.00
|
Bayesian Analysis of Single-Cell Sequencing data |
BioArchLinuxBot
|
2024-05-03 01:33 (UTC) |
|
r-baynorm
|
1.22.0-1 |
0 |
0.00
|
Single-cell RNA sequencing data normalization |
BioArchLinuxBot
|
2024-05-02 21:30 (UTC) |
|
r-biseq
|
1.44.0-1 |
0 |
0.00
|
Processing and analyzing bisulfite sequencing data |
BioArchLinuxBot
|
2024-05-03 12:30 (UTC) |
|
r-bsseq
|
1.40.0-1 |
0 |
0.00
|
Analyze, manage and store bisulfite sequencing data |
BioArchLinuxBot
|
2024-05-03 02:57 (UTC) |
|
r-bubbletree
|
2.34.0-1 |
0 |
0.00
|
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data |
BioArchLinuxBot
|
2024-05-03 05:42 (UTC) |
|
r-cager
|
2.10.0-1 |
0 |
0.00
|
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining |
BioArchLinuxBot
|
2024-05-03 06:36 (UTC) |
|
r-cfdnakit
|
1.2.0-1 |
0 |
0.00
|
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA) |
pekkarr
|
2024-05-02 21:16 (UTC) |
|
r-cfdnapro
|
1.10.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2024-05-03 03:33 (UTC) |
|
r-chipseqr
|
1.58.0-1 |
0 |
0.00
|
Identifying Protein Binding Sites in High-Throughput Sequencing Data |
BioArchLinuxBot
|
2024-05-03 01:27 (UTC) |
|
r-clusterexperiment
|
2.24.0-1 |
0 |
0.00
|
Compare Clusterings for Single-Cell Sequencing |
BioArchLinuxBot
|
2024-05-03 18:21 (UTC) |
|
r-clusterseq
|
1.28.0-1 |
0 |
0.00
|
Clustering of high-throughput sequencing data by identifying co-expression patterns |
BioArchLinuxBot
|
2024-05-02 00:46 (UTC) |
|
r-cnvpanelizer
|
1.36.0-1 |
0 |
0.00
|
Reliable CNV detection in targeted sequencing applications |
BioArchLinuxBot
|
2024-05-02 00:44 (UTC) |