37247 packages found. Page 476 of 745.

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Name Version Votes Popularity? Description Maintainer Last Updated
bayestraits-mpi 4.1.1-1 0 0.00 A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available malacology 2023-11-07 09:43 (UTC)
bbmap 39.06-3 1 0.00 A short read aligner and other bioinformatic tools malacology 2024-02-14 11:06 (UTC)
beagle-lib 4.0.1-1 5 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees malacology 2023-10-13 18:06 (UTC)
beagle-lib-all 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda and opencl) malacology 2024-01-17 06:02 (UTC)
beagle-lib-cuda 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda) malacology 2024-01-17 06:05 (UTC)
beagle-lib-opencl 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with opencl) malacology 2023-10-13 18:05 (UTC)
beast 1.10.4-0 1 0.00 Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 malacology 2023-05-07 11:21 (UTC)
beast2 2.7.6-1 1 0.00 Bayesian Evolutionary Analysis by Sampling Trees. https://doi.org/10.1371/journal.pcbi.1003537 malacology 2024-02-03 07:52 (UTC)
beastgen 1.10.4-0 1 0.00 Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 malacology 2023-05-07 11:21 (UTC)
bedops 2.4.41-2 1 0.00 Highly scalable genomic feature operations. https://doi.org/10.1093/bioinformatics/bts277 malacology 2023-03-03 07:06 (UTC)
bedtools 1:2.31.1-1 16 0.00 powerful toolset for genome arithmetic malacology 2024-01-16 20:38 (UTC)
biobambam 2.0.185_release_20221211202123-1 2 0.00 BAM file pre-processing utilities for bioinformatics. malacology 2022-12-12 00:13 (UTC)
btllib 1.7.2-1 0 0.00 Bioinformatics Technology Lab common code library https://doi.org/10.21105/joss.04720 malacology 2024-04-09 00:03 (UTC)
bucky 1.4.4-4 0 0.00 Bayesian Untangling of Concordance Knots https://doi.org/10.1093/bioinformatics/btq539 malacology 2022-08-28 14:32 (UTC)
clann 194f8aa-1 0 0.00 constructing consensus trees and supertrees from multiple source trees https://doi.org/10.1093/bioinformatics/bti020 malacology 2023-07-29 12:02 (UTC)
classic-delta 2.25g-0 0 0.00 An Open Source System for Processing Taxonomic Descriptions https://doi.org/10.2307/1219595 malacology 2022-11-29 15:54 (UTC)
consel 2011.05.12-0 0 0.00 Assessing the confidence of phylogenetic tree selection https://doi.org/10.1093/bioinformatics/17.12.1246 malacology 2023-02-10 18:37 (UTC)
cufflinks 2.2.2.20190706.162801-2 2 0.00 Transcriptome assembly and differential expression analysis for RNA-Seq. malacology 2023-06-01 21:03 (UTC)
dambe 7-1 0 0.00 New and improved tools for data analysis in molecular biology and evolution malacology 2021-05-11 15:48 (UTC)
dbasic 0.92.0-1 0 0.00 Modern implementation of the original Dartmouth BASIC compilers in the D programming language malacology 2023-10-20 09:41 (UTC)
dnarates 1.1.0-0 0 0.00 estimating site-specific nucleotide substitution rates by maximum likelihood https://doi.org/10.1093/nar/22.17.3485 malacology 2024-02-04 17:28 (UTC)
dnastar7activated 7.1.0-1 0 0.00 leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder malacology 2021-05-13 10:00 (UTC)
easycodeml 1.41-1 1 0.00 A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015 malacology 2023-05-07 12:01 (UTC)
ekho 8.9.3-1 11 0.00 Multilingual text-to-speech (TTS) software for Cantonese, Mandarin, Toisanese, Zhaoan Hakka, Tibetan, Ngangien, Korean and English malacology 2023-06-25 09:48 (UTC)
ev-view 20160216.161212-2 0 0.00 A tool for visualization of evs results. malacology 2022-08-29 22:40 (UTC)
evs 20161229.215801-3 0 0.00 A tool for phylogenetic biogeography malacology 2022-08-29 22:40 (UTC)
examl 3.0.22-3 1 0.00 Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 malacology 2022-08-29 03:55 (UTC)
examl-mpi 3.0.22-3 1 0.00 Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 malacology 2022-08-29 03:55 (UTC)
fastdnaml 1.2.2-0 0 0.00 A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood https://doi.org/10.1093/bioinformatics/10.1.41 malacology 2024-02-05 02:14 (UTC)
fastp 0.23.4-3 0 0.00 a tool designed to provide fast all-in-one preprocessing for FastQ files, developed in C++ with multithreading supported to afford high performance malacology 2023-07-09 10:10 (UTC)
figtree 1.4.4-10 0 0.00 Graphical viewer of phylogenetic trees malacology 2023-04-04 19:02 (UTC)
free-delta 3.3.0-1 0 0.00 An Open Source System for Processing Taxonomic Descriptions malacology 2023-12-30 16:16 (UTC)
freec 11.6-2 0 0.00 Copy number and genotype annotation in whole genome and whole exome sequencing data malacology 2022-04-17 18:01 (UTC)
garli 2.1-4 0 0.00 Phylogenetic analysis of molecular sequence data using the maximum-likelihood criterion malacology 2024-02-22 17:38 (UTC)
garlic 1.6-13 3 0.00 Molecular visualization program malacology 2023-04-04 19:03 (UTC)
garlic-doc 1.6-13 3 0.00 Documentation for garlic malacology 2023-04-04 19:03 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
generax 2.1.3-1 0 0.00 A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss https://doi.org/10.1093/molbev/msaa141 malacology 2024-01-16 20:30 (UTC)
gffcompare 0.12.6-2 1 0.00 classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF malacology 2022-04-17 21:51 (UTC)
gffread 0.12.7-2 1 0.00 GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more malacology 2022-04-17 21:51 (UTC)
iqtree-mpi 2.3.2-1 0 0.00 Efficient phylogenomic software by maximum likelihood; multicore version (OMP). https://doi.org/10.1093/molbev/msaa015 malacology 2024-04-11 12:05 (UTC)
jane 4.01-5 0 0.00 software tool for the cophylogeny reconstruction problem. https://doi.org/10.1186/1748-7188-5-16 malacology 2022-12-01 12:01 (UTC)
jml 1.3.1-2 0 0.00 Testing hybridization using species trees https://doi.org/10.1111/j.1755-0998.2011.03065.x malacology 2022-08-28 10:37 (UTC)
jmodeltest 2.1.10r20160303-7 1 0.00 Phylogenetic Model Averaging, more models, new heuristics and high-performance computing. https://doi.org/10.1093/molbev/msn083 malacology 2022-08-29 21:04 (UTC)
libmaus 2.0.812_release_20220919125234-3 1 0.00 Bioinformatics data structures and algorithms in C++ malacology 2022-10-19 16:35 (UTC)
lvb 4.2-0 0 0.00 parsimony and simulated annealing in the search for phylogenetic trees https://doi.org/10.1093/bioinformatics/btg402 malacology 2023-07-29 12:26 (UTC)
mcscanx 2022.11.01-1 0 0.00 Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293 malacology 2023-02-09 11:42 (UTC)
mega 11.0.13-3 1 0.00 Molecular Evolutionary Genetics Analysis. https://doi.org/10.1093/molbev/msy096 malacology 2023-04-04 19:30 (UTC)
megax-bin 10.2.6-1 2 0.28 Molecular Evolutionary Genetics Analysis malacology 2021-06-12 01:37 (UTC)
mesquite 3.81_build955-1 0 0.00 A modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms malacology 2023-05-15 16:23 (UTC)

37247 packages found. Page 476 of 745.

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