10 packages found. Page 1 of 1.

Name Version Votes Popularity? Description Maintainer
cufflinks 2.2.1-4 2 0.00 Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. greyltc
cufflinks-bin 2.2.1-1 2 0.00 Transcriptome assembly and differential expression analysis for RNA-Seq. vejnar
kallisto 0.45.0-1 1 0.00 Quantify abundances of transcripts from RNA-Seq data flying-sheep
python-loompy 2.0.17-1 0 0.00 Python implementation of the Loom file format for single-cell RNA-seq data flying-sheep
salmon 0.12.0-1 0 0.00 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments tmiller
star-seq-alignment v2.5.3a-1 0 0.00 An RNA-seq alignment suite, by Alexander Dobin nigeil
tophat 2.1.1-2 10 0.00 fast splice junction mapper for RNA-Seq reads greyltc
transabyss 1.5.3-1 1 0.00 de novo assembly of RNA-Seq data using ABySS orphan
star-cshl 2.6.1c-1 4 0.00 STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays vejnar
rsem 1.3.1-1 3 0.88 accurate quantification of gene and isoform expression from RNA-Seq data greyltc

10 packages found. Page 1 of 1.