snap-dna-git
|
v0.15.r199.ea6690f-1 |
0 |
0.00
|
Scalable Nucleotide Alignment Program |
xihh
|
2016-10-09 03:11 (UTC) |
justify-git
|
r17.5ad543a-1 |
0 |
0.00
|
Simple text alignment tool that supports left/right/center/fill justify alignment |
xfnw
|
2022-04-05 00:32 (UTC) |
flova-lightdm-webkit-theme-sequoia-git
|
r30.378dd0c-1 |
0 |
0.00
|
A simple LightDM theme (Flova fork, fixes buttons alignement) |
victorbnl
|
2021-05-01 13:36 (UTC) |
star-cshl
|
2.7.11b-1 |
6 |
0.00
|
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays |
vejnar
|
2024-03-07 23:50 (UTC) |
bwa-mem2
|
2.2.1-1 |
1 |
0.00
|
The next version of Burrows-Wheeler Aligner MEM algorithm |
vejnar
|
2023-05-17 01:02 (UTC) |
bowtie2
|
2.5.3-1 |
16 |
0.00
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. |
vejnar
|
2024-03-16 15:40 (UTC) |
vim-stabs
|
1.2-1 |
0 |
0.00
|
A vim plugin to use tabs for indentation and spaces for alignment |
vali
|
2021-11-12 10:52 (UTC) |
python-tweakwcs
|
0.8.7-1 |
0 |
0.00
|
A package for correcting alignment errors in WCS objects |
Universebenzene
|
2024-04-01 07:52 (UTC) |
dafs-git
|
r108.e9cc15c-1 |
0 |
0.00
|
dual decomposition for aligning and folding RNA sequences simultaneously |
tzok
|
2024-03-21 13:57 (UTC) |
ngmlr
|
0.2.7-1 |
0 |
0.00
|
Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes |
tmiller
|
2018-09-02 07:32 (UTC) |
python-term-background
|
1.0.1-1 |
0 |
0.00
|
Python module to align a simple (not nested) list in columns. |
Techcable
|
2022-08-01 02:50 (UTC) |
python-columnize
|
0.3.11-1 |
0 |
0.00
|
Python module to align a simple (not nested) list in columns. |
Techcable
|
2022-05-07 19:09 (UTC) |
mummer
|
4.0.0rc1-2 |
5 |
0.00
|
MUMmer is a program for rapidly aligning large genomes |
sukanka
|
2022-06-27 11:12 (UTC) |
immix
|
1.3_2-2 |
1 |
0.00
|
Aligns and merges a set of similar images in order to decrease their noise |
stativ
|
2015-07-01 20:46 (UTC) |
neovim-lion-opt-git
|
56.75306ac-1 |
1 |
0.00
|
A simple alignment operator for (neo)vim. |
shanewstone
|
2020-04-30 01:19 (UTC) |
perl-text-aligner
|
0.16-1 |
2 |
0.00
|
Perl CPAN Text::Aligner - Align text in columns |
severach
|
2020-08-18 04:26 (UTC) |
fasttree
|
2.1.11-1 |
3 |
0.00
|
Approximately-Maximum-Likelihood Trees for Large Alignments |
semi
|
2019-09-20 19:21 (UTC) |
clustal-omega
|
1.2.4-1 |
12 |
0.00
|
Protein sequence alignment program |
Rhinoceros
|
2017-01-19 12:07 (UTC) |
locarna
|
1.9.2.2-1 |
2 |
0.00
|
Global and Local Alignment of RNAs |
RaumZeit
|
2019-06-23 16:00 (UTC) |
gotohscan
|
2.0_alpha-1 |
0 |
0.00
|
Search short sequences in large database sequences by computing all semi-global alignments |
RaumZeit
|
2015-09-18 22:10 (UTC) |
clustalx
|
2.1-6 |
3 |
0.00
|
Multiple alignment of nucleic acid and protein sequences |
RaumZeit
|
2021-06-04 16:09 (UTC) |
clustalw
|
2.1-4 |
4 |
0.00
|
Clustal W multiple sequence alignment program, version 2.0 |
RaumZeit
|
2021-06-04 16:05 (UTC) |
edlib
|
1.2.7-5 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2024-05-06 14:57 (UTC) |
snippy
|
4.6.0-2 |
0 |
0.00
|
Rapid haploid variant calling and core genome alignment. |
PumpkinCheshire
|
2021-07-02 08:59 (UTC) |
samclip
|
0.4.0-1 |
0 |
0.00
|
Filter SAM file for soft and hard clipped alignments |
PumpkinCheshire
|
2021-07-24 09:20 (UTC) |
bwa-git
|
v0.7.17.r23.gfbfffc9-2 |
1 |
0.00
|
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
PumpkinCheshire
|
2021-05-09 11:47 (UTC) |
bwa-mem2-git
|
r183.d43752d-1 |
1 |
0.00
|
The next version of Burrows-Wheeler Aligner MEM algorithm |
Piezo
|
2020-08-23 16:23 (UTC) |
bwa
|
0.7.17-2 |
11 |
0.00
|
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
Piezo
|
2022-02-01 17:44 (UTC) |
r-rprimer
|
1.8.0-1 |
0 |
0.00
|
Design Degenerate Oligos from a Multiple DNA Sequence Alignment |
pekkarr
|
2024-05-02 18:38 (UTC) |
r-pwalign
|
1.0.0-1 |
0 |
0.00
|
Perform pairwise sequence alignments |
pekkarr
|
2024-05-02 11:44 (UTC) |
r-ompbam
|
1.8.0-1 |
0 |
0.00
|
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files |
pekkarr
|
2024-05-02 05:08 (UTC) |
mgiza
|
3.0-1 |
0 |
0.00
|
Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models |
panosk
|
2015-10-03 16:35 (UTC) |
giza-pp-git
|
r21.228a39b-1 |
0 |
0.00
|
A statistical machine translation toolkit used to train word alignment models |
panosk
|
2017-01-19 17:41 (UTC) |
fast_align-git
|
r55.7c2bbca-1 |
0 |
0.00
|
Simple, fast unsupervised word aligner |
panosk
|
2019-05-17 19:52 (UTC) |
python-pysam
|
0.22.0-1 |
12 |
0.65
|
Python interface for the SAM/BAM sequence alignment and mapping format |
oldherl
|
2024-04-16 07:41 (UTC) |
center-align
|
r14.bf3c3f0-1 |
0 |
0.00
|
Simple utility to align the stdout text (horizontal+vertical) Middle |
niksingh710
|
2023-08-16 16:13 (UTC) |
star-seq-alignment
|
2.7.2a-1 |
0 |
0.00
|
An RNA-seq alignment suite, by Alexander Dobin |
nigeil
|
2019-08-19 15:50 (UTC) |
segemehl
|
v0.2-1 |
0 |
0.00
|
A sequence aligner based on short read mapping with gaps |
nigeil
|
2017-03-01 20:27 (UTC) |
tcoffee
|
13.46.0.919e8c6b-1 |
6 |
0.00
|
An alignment tool for Protein, DNA and RNA sequences |
mschu
|
2023-08-15 19:00 (UTC) |
tracy-bin
|
0.6.1-1 |
0 |
0.00
|
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files |
malacology
|
2021-11-19 02:04 (UTC) |
stringtie
|
2.2.2-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-04-21 00:02 (UTC) |
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
last
|
1543-1 |
0 |
0.00
|
Genomic aligner for short reads https://doi.org/10.1093/nar/gkq010 |
malacology
|
2024-04-15 12:01 (UTC) |
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
dnastar7activated
|
7.1.0-1 |
0 |
0.00
|
leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder |
malacology
|
2021-05-13 10:00 (UTC) |
bbmap
|
39.06-3 |
1 |
0.00
|
A short read aligner and other bioinformatic tools |
malacology
|
2024-02-14 11:06 (UTC) |
aliview
|
1.28-3 |
1 |
0.87
|
Software for aligning viewing and editing dna/aminoacid sequences https://doi.org/10.1093/bioinformatics/btu531 |
malacology
|
2023-04-25 17:00 (UTC) |
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |
last-align
|
1542-1 |
1 |
0.00
|
Genome-scale comparison of biological sequences |
luscinius
|
2024-02-20 05:39 (UTC) |