128 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer Last Updated
snap-dna-git v0.15.r199.ea6690f-1 0 0.00 Scalable Nucleotide Alignment Program xihh 2016-10-09 03:11 (UTC)
justify-git r17.5ad543a-1 0 0.00 Simple text alignment tool that supports left/right/center/fill justify alignment xfnw 2022-04-05 00:32 (UTC)
flova-lightdm-webkit-theme-sequoia-git r30.378dd0c-1 0 0.00 A simple LightDM theme (Flova fork, fixes buttons alignement) victorbnl 2021-05-01 13:36 (UTC)
star-cshl 2.7.11b-1 6 0.00 STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays vejnar 2024-03-07 23:50 (UTC)
bwa-mem2 2.2.1-1 1 0.00 The next version of Burrows-Wheeler Aligner MEM algorithm vejnar 2023-05-17 01:02 (UTC)
bowtie2 2.5.3-1 16 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. vejnar 2024-03-16 15:40 (UTC)
vim-stabs 1.2-1 0 0.00 A vim plugin to use tabs for indentation and spaces for alignment vali 2021-11-12 10:52 (UTC)
python-tweakwcs 0.8.7-1 0 0.00 A package for correcting alignment errors in WCS objects Universebenzene 2024-04-01 07:52 (UTC)
dafs-git r108.e9cc15c-1 0 0.00 dual decomposition for aligning and folding RNA sequences simultaneously tzok 2024-03-21 13:57 (UTC)
ngmlr 0.2.7-1 0 0.00 Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes tmiller 2018-09-02 07:32 (UTC)
python-term-background 1.0.1-1 0 0.00 Python module to align a simple (not nested) list in columns. Techcable 2022-08-01 02:50 (UTC)
python-columnize 0.3.11-1 0 0.00 Python module to align a simple (not nested) list in columns. Techcable 2022-05-07 19:09 (UTC)
mummer 4.0.0rc1-2 5 0.00 MUMmer is a program for rapidly aligning large genomes sukanka 2022-06-27 11:12 (UTC)
immix 1.3_2-2 1 0.00 Aligns and merges a set of similar images in order to decrease their noise stativ 2015-07-01 20:46 (UTC)
neovim-lion-opt-git 56.75306ac-1 1 0.00 A simple alignment operator for (neo)vim. shanewstone 2020-04-30 01:19 (UTC)
perl-text-aligner 0.16-1 2 0.00 Perl CPAN Text::Aligner - Align text in columns severach 2020-08-18 04:26 (UTC)
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi 2019-09-20 19:21 (UTC)
clustal-omega 1.2.4-1 12 0.00 Protein sequence alignment program Rhinoceros 2017-01-19 12:07 (UTC)
locarna 1.9.2.2-1 2 0.00 Global and Local Alignment of RNAs RaumZeit 2019-06-23 16:00 (UTC)
gotohscan 2.0_alpha-1 0 0.00 Search short sequences in large database sequences by computing all semi-global alignments RaumZeit 2015-09-18 22:10 (UTC)
clustalx 2.1-6 3 0.00 Multiple alignment of nucleic acid and protein sequences RaumZeit 2021-06-04 16:09 (UTC)
clustalw 2.1-4 4 0.00 Clustal W multiple sequence alignment program, version 2.0 RaumZeit 2021-06-04 16:05 (UTC)
edlib 1.2.7-5 0 0.00 Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance qubidt 2024-05-06 14:57 (UTC)
snippy 4.6.0-2 0 0.00 Rapid haploid variant calling and core genome alignment. PumpkinCheshire 2021-07-02 08:59 (UTC)
samclip 0.4.0-1 0 0.00 Filter SAM file for soft and hard clipped alignments PumpkinCheshire 2021-07-24 09:20 (UTC)
bwa-git v0.7.17.r23.gfbfffc9-2 1 0.00 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome PumpkinCheshire 2021-05-09 11:47 (UTC)
bwa-mem2-git r183.d43752d-1 1 0.00 The next version of Burrows-Wheeler Aligner MEM algorithm Piezo 2020-08-23 16:23 (UTC)
bwa 0.7.17-2 11 0.00 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome Piezo 2022-02-01 17:44 (UTC)
r-rprimer 1.8.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2024-05-02 18:38 (UTC)
r-pwalign 1.0.0-1 0 0.00 Perform pairwise sequence alignments pekkarr 2024-05-02 11:44 (UTC)
r-ompbam 1.8.0-1 0 0.00 C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files pekkarr 2024-05-02 05:08 (UTC)
mgiza 3.0-1 0 0.00 Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models panosk 2015-10-03 16:35 (UTC)
giza-pp-git r21.228a39b-1 0 0.00 A statistical machine translation toolkit used to train word alignment models panosk 2017-01-19 17:41 (UTC)
fast_align-git r55.7c2bbca-1 0 0.00 Simple, fast unsupervised word aligner panosk 2019-05-17 19:52 (UTC)
python-pysam 0.22.0-1 12 0.65 Python interface for the SAM/BAM sequence alignment and mapping format oldherl 2024-04-16 07:41 (UTC)
center-align r14.bf3c3f0-1 0 0.00 Simple utility to align the stdout text (horizontal+vertical) Middle niksingh710 2023-08-16 16:13 (UTC)
star-seq-alignment 2.7.2a-1 0 0.00 An RNA-seq alignment suite, by Alexander Dobin nigeil 2019-08-19 15:50 (UTC)
segemehl v0.2-1 0 0.00 A sequence aligner based on short read mapping with gaps nigeil 2017-03-01 20:27 (UTC)
tcoffee 13.46.0.919e8c6b-1 6 0.00 An alignment tool for Protein, DNA and RNA sequences mschu 2023-08-15 19:00 (UTC)
tracy-bin 0.6.1-1 0 0.00 Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files malacology 2021-11-19 02:04 (UTC)
stringtie 2.2.2-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts malacology 2024-04-21 00:02 (UTC)
seaview 5.0.5-8 11 0.00 GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 malacology 2022-09-03 01:59 (UTC)
phyde 0.9971-2 0 0.00 a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data malacology 2022-08-28 10:34 (UTC)
last 1543-1 0 0.00 Genomic aligner for short reads https://doi.org/10.1093/nar/gkq010 malacology 2024-04-15 12:01 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
dnastar7activated 7.1.0-1 0 0.00 leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder malacology 2021-05-13 10:00 (UTC)
bbmap 39.06-3 1 0.00 A short read aligner and other bioinformatic tools malacology 2024-02-14 11:06 (UTC)
aliview 1.28-3 1 0.87 Software for aligning viewing and editing dna/aminoacid sequences https://doi.org/10.1093/bioinformatics/btu531 malacology 2023-04-25 17:00 (UTC)
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01 2016-12-03 20:21 (UTC)
last-align 1542-1 1 0.00 Genome-scale comparison of biological sequences luscinius 2024-02-20 05:39 (UTC)

128 packages found. Page 1 of 3.

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