|
dialign
|
2.2.1-3 |
1 |
0.00
|
Multiple sequence alignment program |
boenki
|
2015-07-06 15:16 (UTC) |
|
gotohscan
|
2.0_alpha-1 |
0 |
0.00
|
Search short sequences in large database sequences by computing all semi-global alignments |
RaumZeit
|
2015-09-18 22:10 (UTC) |
|
mgiza
|
3.0-1 |
0 |
0.00
|
Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models |
panosk
|
2015-10-03 16:35 (UTC) |
|
snap-dna-git
|
v0.15.r199.ea6690f-1 |
0 |
0.00
|
Scalable Nucleotide Alignment Program |
xihh
|
2016-10-09 03:11 (UTC) |
|
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |
|
clustal-omega
|
1.2.4-1 |
12 |
0.00
|
Protein sequence alignment program |
Rhinoceros
|
2017-01-19 12:07 (UTC) |
|
giza-pp-git
|
r21.228a39b-1 |
0 |
0.00
|
A statistical machine translation toolkit used to train word alignment models |
panosk
|
2017-01-19 17:41 (UTC) |
|
tmtools
|
20170708-1 |
0 |
0.00
|
TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix |
orphan
|
2018-01-31 15:44 (UTC) |
|
pfam
|
31.0-1 |
0 |
0.00
|
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
anadon
|
2018-04-02 16:31 (UTC) |
|
tigrfam
|
15.0-1 |
0 |
0.00
|
TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. |
anadon
|
2018-04-02 17:56 (UTC) |
|
vim-tabular-git
|
1.0.0.r1.g00e1e7f-1 |
4 |
0.00
|
Vim script for text filtering and alignment |
dlin
|
2018-05-18 16:51 (UTC) |
|
gmap-gsnap
|
2019.03.15-1 |
3 |
0.00
|
A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program |
orphan
|
2019-04-22 21:12 (UTC) |
|
locarna
|
1.9.2.2-1 |
2 |
0.00
|
Global and Local Alignment of RNAs |
RaumZeit
|
2019-06-23 16:00 (UTC) |
|
star-seq-alignment
|
2.7.2a-1 |
0 |
0.00
|
An RNA-seq alignment suite, by Alexander Dobin |
nigeil
|
2019-08-19 15:50 (UTC) |
|
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
|
fasttree
|
2.1.11-1 |
3 |
0.00
|
Approximately-Maximum-Likelihood Trees for Large Alignments |
semi
|
2019-09-20 19:21 (UTC) |
|
vim-easy-align
|
2.10.0-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 21:53 (UTC) |
|
vim-easy-align-git
|
2.10.0+20.g12dd631697-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 22:03 (UTC) |
|
neovim-lion-opt-git
|
56.75306ac-1 |
1 |
0.00
|
A simple alignment operator for (neo)vim. |
shanewstone
|
2020-04-30 01:19 (UTC) |
|
hisat2
|
2.2.1-1 |
3 |
0.32
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
|
python-astroalign
|
2.3.1-00 |
0 |
0.00
|
Astrometric Alignment of Images |
Arcturus
|
2021-01-11 08:36 (UTC) |
|
clustalw
|
2.1-4 |
4 |
0.00
|
Clustal W multiple sequence alignment program, version 2.0 |
RaumZeit
|
2021-06-04 16:05 (UTC) |
|
clustalx
|
2.1-6 |
3 |
0.00
|
Multiple alignment of nucleic acid and protein sequences |
RaumZeit
|
2021-06-04 16:09 (UTC) |
|
snippy
|
4.6.0-2 |
0 |
0.00
|
Rapid haploid variant calling and core genome alignment. |
PumpkinCheshire
|
2021-07-02 08:59 (UTC) |
|
samclip
|
0.4.0-1 |
0 |
0.00
|
Filter SAM file for soft and hard clipped alignments |
PumpkinCheshire
|
2021-07-24 09:20 (UTC) |
|
vim-stabs
|
1.2-1 |
0 |
0.00
|
A vim plugin to use tabs for indentation and spaces for alignment |
vali
|
2021-11-12 10:52 (UTC) |
|
tracy-bin
|
0.6.1-1 |
0 |
0.00
|
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files |
malacology
|
2021-11-19 02:04 (UTC) |
|
jalview
|
2.11.2.0-2 |
11 |
0.00
|
Bioinformatics Multiple Alignment Editor |
orphan
|
2022-03-25 07:22 (UTC) |
|
justify-git
|
r17.5ad543a-1 |
0 |
0.00
|
Simple text alignment tool that supports left/right/center/fill justify alignment |
xfnw
|
2022-04-05 00:32 (UTC) |
|
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
|
r-msar
|
0.6.0-2 |
0 |
0.00
|
Multiple Sequence Alignment for R Shiny |
BioArchLinuxBot
|
2022-06-06 08:17 (UTC) |
|
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
|
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
|
r-egg
|
0.4.5-7 |
0 |
0.00
|
Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |
BioArchLinuxBot
|
2022-10-18 12:52 (UTC) |
|
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
|
r-speaq
|
2.7.0-6 |
1 |
0.00
|
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
BioArchLinuxBot
|
2022-11-26 15:40 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
|
r-balcony
|
0.2.10-4 |
0 |
0.00
|
Better ALignment CONsensus analYsis |
BioArchLinuxBot
|
2023-04-22 23:02 (UTC) |
|
r-scalign
|
1.12.0-4 |
0 |
0.00
|
An alignment and integration method for single cell genomics |
BioArchLinuxBot
|
2023-04-29 05:24 (UTC) |
|
python-pytrimal
|
0.7.0-1 |
0 |
0.00
|
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
althonos
|
2023-07-21 19:19 (UTC) |
|
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
|
tcoffee
|
13.46.0.919e8c6b-1 |
6 |
0.00
|
An alignment tool for Protein, DNA and RNA sequences |
mschu
|
2023-08-15 19:00 (UTC) |
|
python-face-alignment
|
1.4.1-1 |
2 |
0.00
|
Detect facial landmarks from Python using an accurate face alignment network |
orphan
|
2023-09-17 21:52 (UTC) |
|
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
|
python-spacy-alignments
|
0.9.1-1 |
2 |
0.04
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |
|
r-funchip
|
1.28.0-1 |
0 |
0.00
|
Clustering and Alignment of ChIP-Seq peaks based on their shapes |
BioArchLinuxBot
|
2023-10-27 07:37 (UTC) |
|
r-rsamtools
|
2.18.0-1 |
0 |
0.00
|
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
greyltc
|
2023-11-02 10:59 (UTC) |
|
spaln
|
3.0.2-2 |
0 |
0.00
|
Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA |
kbipinkumar
|
2023-11-17 07:09 (UTC) |
|
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |