|
gmap-gsnap
|
2019.03.15-1 |
3 |
0.00
|
A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program |
orphan
|
2019-04-22 21:12 (UTC) |
|
jalview
|
2.11.2.0-2 |
11 |
0.00
|
Bioinformatics Multiple Alignment Editor |
orphan
|
2022-03-25 07:22 (UTC) |
|
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
|
python-face-alignment
|
1.4.1-1 |
2 |
0.00
|
Detect facial landmarks from Python using an accurate face alignment network |
orphan
|
2023-09-17 21:52 (UTC) |
|
tmtools
|
20170708-1 |
0 |
0.00
|
TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix |
orphan
|
2018-01-31 15:44 (UTC) |
|
vim-easy-align
|
2.10.0-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 21:53 (UTC) |
|
vim-easy-align-git
|
2.10.0+20.g12dd631697-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 22:03 (UTC) |
|
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
|
python-pyfamsa
|
0.4.0-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-05-06 14:44 (UTC) |
|
python-pyswrd
|
0.2.0-1 |
0 |
0.00
|
Cython bindings and Python interface to SWORD, a method for query-database alignment. |
althonos
|
2024-05-15 09:36 (UTC) |
|
python-pytrimal
|
0.7.0-1 |
0 |
0.00
|
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
althonos
|
2023-07-21 19:19 (UTC) |
|
pfam
|
31.0-1 |
0 |
0.00
|
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
anadon
|
2018-04-02 16:31 (UTC) |
|
tigrfam
|
15.0-1 |
0 |
0.00
|
TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. |
anadon
|
2018-04-02 17:56 (UTC) |
|
python-astroalign
|
2.3.1-00 |
0 |
0.00
|
Astrometric Alignment of Images |
Arcturus
|
2021-01-11 08:36 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
|
r-balcony
|
0.2.10-4 |
0 |
0.00
|
Better ALignment CONsensus analYsis |
BioArchLinuxBot
|
2023-04-22 23:02 (UTC) |
|
r-dialignr
|
2.12.0-1 |
0 |
0.00
|
Dynamic Programming Based Alignment of MS2 Chromatograms |
BioArchLinuxBot
|
2024-05-01 22:44 (UTC) |
|
r-egg
|
0.4.5-7 |
0 |
0.00
|
Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |
BioArchLinuxBot
|
2022-10-18 12:52 (UTC) |
|
r-funchip
|
1.28.0-1 |
0 |
0.00
|
Clustering and Alignment of ChIP-Seq peaks based on their shapes |
BioArchLinuxBot
|
2023-10-27 07:37 (UTC) |
|
r-ggmsa
|
1.10.0-1 |
0 |
0.00
|
Plot Multiple Sequence Alignment using 'ggplot2' |
BioArchLinuxBot
|
2024-05-02 01:55 (UTC) |
|
r-girafe
|
1.56.0-1 |
0 |
0.00
|
Genome Intervals and Read Alignments for Functional Exploration |
BioArchLinuxBot
|
2024-05-03 01:20 (UTC) |
|
r-graphalignment
|
1.68.0-1 |
0 |
0.00
|
GraphAlignment |
BioArchLinuxBot
|
2024-05-02 03:53 (UTC) |
|
r-h5vc
|
2.38.0-1 |
0 |
0.00
|
Managing alignment tallies using a hdf5 backend |
BioArchLinuxBot
|
2024-05-02 00:42 (UTC) |
|
r-lowmaca
|
1.28.0-3 |
0 |
0.00
|
Low frequency Mutation Analysis via Consensus Alignment |
BioArchLinuxBot
|
2024-02-15 18:05 (UTC) |
|
r-msa
|
1.36.0-1 |
0 |
0.00
|
Multiple Sequence Alignment |
BioArchLinuxBot
|
2024-05-02 00:12 (UTC) |
|
r-msar
|
0.6.0-2 |
0 |
0.00
|
Multiple Sequence Alignment for R Shiny |
BioArchLinuxBot
|
2022-06-06 08:17 (UTC) |
|
r-muscle
|
3.46.0-1 |
0 |
0.00
|
Multiple Sequence Alignment with MUSCLE |
BioArchLinuxBot
|
2024-05-02 00:21 (UTC) |
|
r-ncgtw
|
1.18.0-1 |
0 |
0.00
|
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection |
BioArchLinuxBot
|
2024-05-03 13:38 (UTC) |
|
r-odseq
|
1.32.0-1 |
0 |
0.00
|
Outlier detection in multiple sequence alignments |
BioArchLinuxBot
|
2024-05-02 01:53 (UTC) |
|
r-roar
|
1.40.0-1 |
0 |
0.00
|
Identify differential APA usage from RNA-seq alignments |
BioArchLinuxBot
|
2024-05-03 00:55 (UTC) |
|
r-scalign
|
1.12.0-4 |
0 |
0.00
|
An alignment and integration method for single cell genomics |
BioArchLinuxBot
|
2023-04-29 05:24 (UTC) |
|
r-seqlogo
|
1.70.0-1 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-05-02 03:17 (UTC) |
|
r-speaq
|
2.7.0-6 |
1 |
0.00
|
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
BioArchLinuxBot
|
2022-11-26 15:40 (UTC) |
|
wfa2-lib
|
2.3.5-1 |
0 |
0.00
|
Wavefront alignment algorithm library v2 |
BioArchLinuxBot
|
2024-04-20 12:01 (UTC) |
|
dialign
|
2.2.1-3 |
1 |
0.00
|
Multiple sequence alignment program |
boenki
|
2015-07-06 15:16 (UTC) |
|
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
|
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
|
vim-tabular-git
|
1.0.0.r1.g00e1e7f-1 |
4 |
0.00
|
Vim script for text filtering and alignment |
dlin
|
2018-05-18 16:51 (UTC) |
|
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |
|
hisat2
|
2.2.1-1 |
3 |
0.49
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
|
r-genomicalignments
|
1.38.2-1 |
0 |
0.00
|
Representation and manipulation of short genomic alignments |
greyltc
|
2024-04-08 14:55 (UTC) |
|
r-rsamtools
|
2.18.0-1 |
0 |
0.00
|
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
greyltc
|
2023-11-02 10:59 (UTC) |
|
python-spacy-alignments
|
0.9.1-1 |
2 |
0.07
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |
|
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
|
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
|
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
|
salmon
|
1.10.3-1 |
0 |
0.00
|
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments |
kbipinkumar
|
2024-03-16 00:06 (UTC) |
|
spaln
|
3.0.2-2 |
0 |
0.00
|
Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA |
kbipinkumar
|
2023-11-17 07:09 (UTC) |
|
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |