77 packages found. Page 1 of 2.

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Name Version Votes Popularity? Description Maintainer Last Updated
mafft 7.526-1 14 0.00 Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 BioArchLinuxBot 2024-04-26 13:05 (UTC)
python-pysam 0.22.0-1 12 0.37 Python interface for the SAM/BAM sequence alignment and mapping format oldherl 2024-04-16 07:41 (UTC)
clustal-omega 1.2.4-1 12 0.00 Protein sequence alignment program Rhinoceros 2017-01-19 12:07 (UTC)
seaview 5.0.5-8 11 0.00 GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 malacology 2022-09-03 01:59 (UTC)
jalview 2.11.2.0-2 11 0.00 Bioinformatics Multiple Alignment Editor orphan 2022-03-25 07:22 (UTC)
bowtie 1.3.1-1 8 0.00 Alignment tool for short nucleotide sequences against long templates a821 2022-10-28 15:22 (UTC)
tcoffee 13.46.0.919e8c6b-1 6 0.00 An alignment tool for Protein, DNA and RNA sequences mschu 2023-08-15 19:00 (UTC)
vim-tabular-git 1.0.0.r1.g00e1e7f-1 4 0.00 Vim script for text filtering and alignment dlin 2018-05-18 16:51 (UTC)
clustalw 2.1-4 4 0.00 Clustal W multiple sequence alignment program, version 2.0 RaumZeit 2021-06-04 16:05 (UTC)
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01 2016-12-03 20:21 (UTC)
hisat2 2.2.1-1 3 0.49 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep 2020-10-21 14:45 (UTC)
gmap-gsnap 2019.03.15-1 3 0.00 A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program orphan 2019-04-22 21:12 (UTC)
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi 2019-09-20 19:21 (UTC)
clustalx 2.1-6 3 0.00 Multiple alignment of nucleic acid and protein sequences RaumZeit 2021-06-04 16:09 (UTC)
python-spacy-alignments 0.9.1-1 2 0.07 A spaCy package for the Rust tokenizations library jnphilipp 2023-09-25 12:25 (UTC)
python-face-alignment 1.4.1-1 2 0.00 Detect facial landmarks from Python using an accurate face alignment network orphan 2023-09-17 21:52 (UTC)
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. orphan 2019-08-25 03:20 (UTC)
locarna 1.9.2.2-1 2 0.00 Global and Local Alignment of RNAs RaumZeit 2019-06-23 16:00 (UTC)
r-speaq 2.7.0-6 1 0.00 Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations BioArchLinuxBot 2022-11-26 15:40 (UTC)
neovim-lion-opt-git 56.75306ac-1 1 0.00 A simple alignment operator for (neo)vim. shanewstone 2020-04-30 01:19 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
dialign 2.2.1-3 1 0.00 Multiple sequence alignment program boenki 2015-07-06 15:16 (UTC)
wfa2-lib 2.3.5-1 0 0.00 Wavefront alignment algorithm library v2 BioArchLinuxBot 2024-04-20 12:01 (UTC)
vim-stabs 1.2-1 0 0.00 A vim plugin to use tabs for indentation and spaces for alignment vali 2021-11-12 10:52 (UTC)
vim-easy-align-git 2.10.0+20.g12dd631697-1 0 0.00 Vim alignment plugin orphan 2020-04-18 22:03 (UTC)
vim-easy-align 2.10.0-1 0 0.00 Vim alignment plugin orphan 2020-04-18 21:53 (UTC)
trimal 1.4.1-1 0 0.00 A tool for automated alignment trimming in large-scale phylogenetic analyses exyi 2023-11-17 17:33 (UTC)
tracy-bin 0.6.1-1 0 0.00 Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files malacology 2021-11-19 02:04 (UTC)
tmtools 20170708-1 0 0.00 TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix orphan 2018-01-31 15:44 (UTC)
tigrfam 15.0-1 0 0.00 TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. anadon 2018-04-02 17:56 (UTC)
stringtie 2.2.3-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts malacology 2024-05-08 06:01 (UTC)
star-seq-alignment 2.7.2a-1 0 0.00 An RNA-seq alignment suite, by Alexander Dobin nigeil 2019-08-19 15:50 (UTC)
spaln 3.0.2-2 0 0.00 Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA kbipinkumar 2023-11-17 07:09 (UTC)
snippy 4.6.0-2 0 0.00 Rapid haploid variant calling and core genome alignment. PumpkinCheshire 2021-07-02 08:59 (UTC)
snap-dna-git v0.15.r199.ea6690f-1 0 0.00 Scalable Nucleotide Alignment Program xihh 2016-10-09 03:11 (UTC)
samclip 0.4.0-1 0 0.00 Filter SAM file for soft and hard clipped alignments PumpkinCheshire 2021-07-24 09:20 (UTC)
salmon 1.10.3-1 0 0.00 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments kbipinkumar 2024-03-16 00:06 (UTC)
r-seqlogo 1.70.0-1 0 0.00 Sequence logos for DNA sequence alignments BioArchLinuxBot 2024-05-02 03:17 (UTC)
r-scalign 1.12.0-4 0 0.00 An alignment and integration method for single cell genomics BioArchLinuxBot 2023-04-29 05:24 (UTC)
r-rsamtools 2.18.0-1 0 0.00 Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import greyltc 2023-11-02 10:59 (UTC)
r-rprimer 1.8.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2024-05-02 18:38 (UTC)
r-roar 1.40.0-1 0 0.00 Identify differential APA usage from RNA-seq alignments BioArchLinuxBot 2024-05-03 00:55 (UTC)
r-pwalign 1.0.0-1 0 0.00 Perform pairwise sequence alignments pekkarr 2024-05-02 11:44 (UTC)
r-ompbam 1.8.0-1 0 0.00 C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files pekkarr 2024-05-02 05:08 (UTC)
r-odseq 1.32.0-1 0 0.00 Outlier detection in multiple sequence alignments BioArchLinuxBot 2024-05-02 01:53 (UTC)
r-ncgtw 1.18.0-1 0 0.00 Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection BioArchLinuxBot 2024-05-03 13:38 (UTC)
r-muscle 3.46.0-1 0 0.00 Multiple Sequence Alignment with MUSCLE BioArchLinuxBot 2024-05-02 00:21 (UTC)
r-msar 0.6.0-2 0 0.00 Multiple Sequence Alignment for R Shiny BioArchLinuxBot 2022-06-06 08:17 (UTC)
r-msa 1.36.0-1 0 0.00 Multiple Sequence Alignment BioArchLinuxBot 2024-05-02 00:12 (UTC)
r-lowmaca 1.28.0-3 0 0.00 Low frequency Mutation Analysis via Consensus Alignment BioArchLinuxBot 2024-02-15 18:05 (UTC)

77 packages found. Page 1 of 2.

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