128 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer Last Updated
stringtie 2.2.3-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts malacology 2024-05-08 06:01 (UTC)
r-rhisat2 1.20.0-1 0 0.00 R Wrapper for HISAT2 Aligner BioArchLinuxBot 2024-05-07 18:04 (UTC)
edlib 1.2.7-5 0 0.00 Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance qubidt 2024-05-06 14:57 (UTC)
python-pyfamsa 0.4.0-1 0 0.00 Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments althonos 2024-05-06 14:44 (UTC)
android-sdk-build-tools-zipalign-provides r34.0.0-2 0 0.00 Dummy/ meta package that satisfies 'zipalign' dependency by 'android-sdk-build-tools'. dreieck 2024-05-05 18:23 (UTC)
r-ncgtw 1.18.0-1 0 0.00 Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection BioArchLinuxBot 2024-05-03 13:38 (UTC)
r-girafe 1.56.0-1 0 0.00 Genome Intervals and Read Alignments for Functional Exploration BioArchLinuxBot 2024-05-03 01:20 (UTC)
r-roar 1.40.0-1 0 0.00 Identify differential APA usage from RNA-seq alignments BioArchLinuxBot 2024-05-03 00:55 (UTC)
r-rprimer 1.8.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2024-05-02 18:38 (UTC)
r-pwalign 1.0.0-1 0 0.00 Perform pairwise sequence alignments pekkarr 2024-05-02 11:44 (UTC)
r-ompbam 1.8.0-1 0 0.00 C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files pekkarr 2024-05-02 05:08 (UTC)
r-graphalignment 1.68.0-1 0 0.00 GraphAlignment BioArchLinuxBot 2024-05-02 03:53 (UTC)
r-seqlogo 1.70.0-1 0 0.00 Sequence logos for DNA sequence alignments BioArchLinuxBot 2024-05-02 03:17 (UTC)
r-ggmsa 1.10.0-1 0 0.00 Plot Multiple Sequence Alignment using 'ggplot2' BioArchLinuxBot 2024-05-02 01:55 (UTC)
r-odseq 1.32.0-1 0 0.00 Outlier detection in multiple sequence alignments BioArchLinuxBot 2024-05-02 01:53 (UTC)
r-h5vc 2.38.0-1 0 0.00 Managing alignment tallies using a hdf5 backend BioArchLinuxBot 2024-05-02 00:42 (UTC)
r-muscle 3.46.0-1 0 0.00 Multiple Sequence Alignment with MUSCLE BioArchLinuxBot 2024-05-02 00:21 (UTC)
r-msa 1.36.0-1 0 0.00 Multiple Sequence Alignment BioArchLinuxBot 2024-05-02 00:12 (UTC)
r-dialignr 2.12.0-1 0 0.00 Dynamic Programming Based Alignment of MS2 Chromatograms BioArchLinuxBot 2024-05-01 22:44 (UTC)
mafft 7.526-1 14 0.00 Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 BioArchLinuxBot 2024-04-26 13:05 (UTC)
wfa2-lib 2.3.5-1 0 0.00 Wavefront alignment algorithm library v2 BioArchLinuxBot 2024-04-20 12:01 (UTC)
python-pysam 0.22.0-1 12 0.65 Python interface for the SAM/BAM sequence alignment and mapping format oldherl 2024-04-16 07:41 (UTC)
last 1543-1 0 0.00 Genomic aligner for short reads https://doi.org/10.1093/nar/gkq010 malacology 2024-04-15 12:01 (UTC)
r-genomicalignments 1.38.2-1 0 0.00 Representation and manipulation of short genomic alignments greyltc 2024-04-08 14:55 (UTC)
python-tweakwcs 0.8.7-1 0 0.00 A package for correcting alignment errors in WCS objects Universebenzene 2024-04-01 07:52 (UTC)
python-mappy 2.28-1 0 0.00 Python interface to minimap2, a fast and accurate C program to align genomic and transcribe nucleotide sequences kbipinkumar 2024-03-27 18:10 (UTC)
minimap2-bin 2.28-1 0 0.00 Aligner for genomic and spliced nucleotide sequences Chocobo1 2024-03-27 15:12 (UTC)
dafs-git r108.e9cc15c-1 0 0.00 dual decomposition for aligning and folding RNA sequences simultaneously tzok 2024-03-21 13:57 (UTC)
bowtie2-git 2.5.3.r0.ga43fa6f-1 0 0.00 Tool for aligning sequencing reads to long reference sequences a821 2024-03-21 09:27 (UTC)
vim-align 37.43-6 1 0.87 Lets you align lines using regular expressions orphan 2024-03-19 21:55 (UTC)
bowtie2 2.5.3-1 16 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. vejnar 2024-03-16 15:40 (UTC)
salmon 1.10.3-1 0 0.00 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments kbipinkumar 2024-03-16 00:06 (UTC)
star-cshl 2.7.11b-1 6 0.00 STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays vejnar 2024-03-07 23:50 (UTC)
python-pyswrd 0.1.1-1 0 0.00 Cython bindings and Python interface to SWORD, a method for query-database alignment. althonos 2024-02-28 10:41 (UTC)
python-pyopal 0.5.2-1 0 0.00 Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner. althonos 2024-02-28 00:31 (UTC)
last-align 1542-1 1 0.00 Genome-scale comparison of biological sequences luscinius 2024-02-20 05:39 (UTC)
r-lowmaca 1.28.0-3 0 0.00 Low frequency Mutation Analysis via Consensus Alignment BioArchLinuxBot 2024-02-15 18:05 (UTC)
bbmap 39.06-3 1 0.00 A short read aligner and other bioinformatic tools malacology 2024-02-14 11:06 (UTC)
diamond 2.1.9-1 3 0.00 High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x BioArchLinuxBot 2024-01-31 18:09 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
bowtie2-bin 2.5.3-1 0 0.00 Tool for aligning sequencing reads to long reference sequences Chocobo1 2024-01-17 03:55 (UTC)
abpoa 1.5.1-1 0 0.00 SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 kbipinkumar 2024-01-16 06:03 (UTC)
mashmap 3.1.3-1 0 0.00 Fast approximate aligner for long DNA sequences kbipinkumar 2024-01-04 18:02 (UTC)
biodiff-bin 1.1.0-1 0 0.00 Hex diff viewer using alignment algorithms from biology icecamphor 2023-11-23 18:10 (UTC)
trimal 1.4.1-1 0 0.00 A tool for automated alignment trimming in large-scale phylogenetic analyses exyi 2023-11-17 17:33 (UTC)
spaln 3.0.2-2 0 0.00 Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA kbipinkumar 2023-11-17 07:09 (UTC)
r-rsamtools 2.18.0-1 0 0.00 Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import greyltc 2023-11-02 10:59 (UTC)
r-funchip 1.28.0-1 0 0.00 Clustering and Alignment of ChIP-Seq peaks based on their shapes BioArchLinuxBot 2023-10-27 07:37 (UTC)
lzsa 1.4.1-1 1 0.02 Byte-aligned, efficient lossless packer for fast decompression on 8-bit micros FredBezies 2023-10-11 10:26 (UTC)
python-spacy-alignments 0.9.1-1 2 0.12 A spaCy package for the Rust tokenizations library jnphilipp 2023-09-25 12:25 (UTC)

128 packages found. Page 1 of 3.

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