stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
r-rhisat2
|
1.20.0-1 |
0 |
0.00
|
R Wrapper for HISAT2 Aligner |
BioArchLinuxBot
|
2024-05-07 18:04 (UTC) |
edlib
|
1.2.7-5 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2024-05-06 14:57 (UTC) |
python-pyfamsa
|
0.4.0-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-05-06 14:44 (UTC) |
android-sdk-build-tools-zipalign-provides
|
r34.0.0-2 |
0 |
0.00
|
Dummy/ meta package that satisfies 'zipalign' dependency by 'android-sdk-build-tools'. |
dreieck
|
2024-05-05 18:23 (UTC) |
r-ncgtw
|
1.18.0-1 |
0 |
0.00
|
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection |
BioArchLinuxBot
|
2024-05-03 13:38 (UTC) |
r-girafe
|
1.56.0-1 |
0 |
0.00
|
Genome Intervals and Read Alignments for Functional Exploration |
BioArchLinuxBot
|
2024-05-03 01:20 (UTC) |
r-roar
|
1.40.0-1 |
0 |
0.00
|
Identify differential APA usage from RNA-seq alignments |
BioArchLinuxBot
|
2024-05-03 00:55 (UTC) |
r-rprimer
|
1.8.0-1 |
0 |
0.00
|
Design Degenerate Oligos from a Multiple DNA Sequence Alignment |
pekkarr
|
2024-05-02 18:38 (UTC) |
r-pwalign
|
1.0.0-1 |
0 |
0.00
|
Perform pairwise sequence alignments |
pekkarr
|
2024-05-02 11:44 (UTC) |
r-ompbam
|
1.8.0-1 |
0 |
0.00
|
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files |
pekkarr
|
2024-05-02 05:08 (UTC) |
r-graphalignment
|
1.68.0-1 |
0 |
0.00
|
GraphAlignment |
BioArchLinuxBot
|
2024-05-02 03:53 (UTC) |
r-seqlogo
|
1.70.0-1 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-05-02 03:17 (UTC) |
r-ggmsa
|
1.10.0-1 |
0 |
0.00
|
Plot Multiple Sequence Alignment using 'ggplot2' |
BioArchLinuxBot
|
2024-05-02 01:55 (UTC) |
r-odseq
|
1.32.0-1 |
0 |
0.00
|
Outlier detection in multiple sequence alignments |
BioArchLinuxBot
|
2024-05-02 01:53 (UTC) |
r-h5vc
|
2.38.0-1 |
0 |
0.00
|
Managing alignment tallies using a hdf5 backend |
BioArchLinuxBot
|
2024-05-02 00:42 (UTC) |
r-muscle
|
3.46.0-1 |
0 |
0.00
|
Multiple Sequence Alignment with MUSCLE |
BioArchLinuxBot
|
2024-05-02 00:21 (UTC) |
r-msa
|
1.36.0-1 |
0 |
0.00
|
Multiple Sequence Alignment |
BioArchLinuxBot
|
2024-05-02 00:12 (UTC) |
r-dialignr
|
2.12.0-1 |
0 |
0.00
|
Dynamic Programming Based Alignment of MS2 Chromatograms |
BioArchLinuxBot
|
2024-05-01 22:44 (UTC) |
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
wfa2-lib
|
2.3.5-1 |
0 |
0.00
|
Wavefront alignment algorithm library v2 |
BioArchLinuxBot
|
2024-04-20 12:01 (UTC) |
python-pysam
|
0.22.0-1 |
12 |
0.65
|
Python interface for the SAM/BAM sequence alignment and mapping format |
oldherl
|
2024-04-16 07:41 (UTC) |
last
|
1543-1 |
0 |
0.00
|
Genomic aligner for short reads https://doi.org/10.1093/nar/gkq010 |
malacology
|
2024-04-15 12:01 (UTC) |
r-genomicalignments
|
1.38.2-1 |
0 |
0.00
|
Representation and manipulation of short genomic alignments |
greyltc
|
2024-04-08 14:55 (UTC) |
python-tweakwcs
|
0.8.7-1 |
0 |
0.00
|
A package for correcting alignment errors in WCS objects |
Universebenzene
|
2024-04-01 07:52 (UTC) |
python-mappy
|
2.28-1 |
0 |
0.00
|
Python interface to minimap2, a fast and accurate C program to align genomic and transcribe nucleotide sequences |
kbipinkumar
|
2024-03-27 18:10 (UTC) |
minimap2-bin
|
2.28-1 |
0 |
0.00
|
Aligner for genomic and spliced nucleotide sequences |
Chocobo1
|
2024-03-27 15:12 (UTC) |
dafs-git
|
r108.e9cc15c-1 |
0 |
0.00
|
dual decomposition for aligning and folding RNA sequences simultaneously |
tzok
|
2024-03-21 13:57 (UTC) |
bowtie2-git
|
2.5.3.r0.ga43fa6f-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
a821
|
2024-03-21 09:27 (UTC) |
vim-align
|
37.43-6 |
1 |
0.87
|
Lets you align lines using regular expressions |
orphan
|
2024-03-19 21:55 (UTC) |
bowtie2
|
2.5.3-1 |
16 |
0.00
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. |
vejnar
|
2024-03-16 15:40 (UTC) |
salmon
|
1.10.3-1 |
0 |
0.00
|
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments |
kbipinkumar
|
2024-03-16 00:06 (UTC) |
star-cshl
|
2.7.11b-1 |
6 |
0.00
|
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays |
vejnar
|
2024-03-07 23:50 (UTC) |
python-pyswrd
|
0.1.1-1 |
0 |
0.00
|
Cython bindings and Python interface to SWORD, a method for query-database alignment. |
althonos
|
2024-02-28 10:41 (UTC) |
python-pyopal
|
0.5.2-1 |
0 |
0.00
|
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner. |
althonos
|
2024-02-28 00:31 (UTC) |
last-align
|
1542-1 |
1 |
0.00
|
Genome-scale comparison of biological sequences |
luscinius
|
2024-02-20 05:39 (UTC) |
r-lowmaca
|
1.28.0-3 |
0 |
0.00
|
Low frequency Mutation Analysis via Consensus Alignment |
BioArchLinuxBot
|
2024-02-15 18:05 (UTC) |
bbmap
|
39.06-3 |
1 |
0.00
|
A short read aligner and other bioinformatic tools |
malacology
|
2024-02-14 11:06 (UTC) |
diamond
|
2.1.9-1 |
3 |
0.00
|
High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x |
BioArchLinuxBot
|
2024-01-31 18:09 (UTC) |
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
bowtie2-bin
|
2.5.3-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
Chocobo1
|
2024-01-17 03:55 (UTC) |
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
mashmap
|
3.1.3-1 |
0 |
0.00
|
Fast approximate aligner for long DNA sequences |
kbipinkumar
|
2024-01-04 18:02 (UTC) |
biodiff-bin
|
1.1.0-1 |
0 |
0.00
|
Hex diff viewer using alignment algorithms from biology |
icecamphor
|
2023-11-23 18:10 (UTC) |
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |
spaln
|
3.0.2-2 |
0 |
0.00
|
Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA |
kbipinkumar
|
2023-11-17 07:09 (UTC) |
r-rsamtools
|
2.18.0-1 |
0 |
0.00
|
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
greyltc
|
2023-11-02 10:59 (UTC) |
r-funchip
|
1.28.0-1 |
0 |
0.00
|
Clustering and Alignment of ChIP-Seq peaks based on their shapes |
BioArchLinuxBot
|
2023-10-27 07:37 (UTC) |
lzsa
|
1.4.1-1 |
1 |
0.02
|
Byte-aligned, efficient lossless packer for fast decompression on 8-bit micros |
FredBezies
|
2023-10-11 10:26 (UTC) |
python-spacy-alignments
|
0.9.1-1 |
2 |
0.12
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |