77 packages found. Page 1 of 2.

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Name Version Votes Popularity? Description Maintainer
align-git 1.1.0.r0.g3cf3157-2 0 0.00 A general purpose application for aligning text ragouel
alignace 1.0-6 0 0.00 Program that finds sequence elements conserved in a set of DNA sequences allencch
bamrescue 0.2.0-1 0 0.00 Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them Arkanosis
bamtools-git 20110606-1 1 0.00 API and toolkit for reading, writing, and manipulating BAM (genome alignment) files. benwbooth
blat 35-1 2 0.00 The BLAST-like Alignment Tool: fast sequence search command line tool Synchronicity
bowtie 1.2.3-1 8 0.00 Bowtie is an alignment tool for short nucleotide sequences against long templates Athemis
bowtie2 2.3.5.1-1 15 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. greyltc
bowtie2-git v2.2.9.r9.g9c90266-1 0 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. greyltc
dafs-git 0.0.2.6.g8b19266-1 0 0.00 DAFS: simultaneous aligning and folding of RNA sequences by dual decomposition khughitt
dialign 2.2.1-3 1 0.00 Multiple sequence alignment program boenki
diamond-aligner 0.9.30-1 0 0.00 accelerated BLAST compatible local sequence aligner orphan
diamond-aligner-git 0.9.27.r1.g58ee82e-1 0 0.00 Accelerated BLAST compatible local sequence aligner robymetallo
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi
fast_align-git r55.7c2bbca-1 0 0.00 Simple, fast unsupervised word aligner panosk
gblocks-bin 0.91b-1 0 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences robymetallo
giza-pp-git r21.228a39b-1 0 0.00 A statistical machine translation toolkit used to train word alignment models panosk
gmap-gsnap 2019.03.15-1 3 0.00 A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program benwbooth
gopium 1.1.0-1 0 0.00 Smart Go Structures Optimizer and Manager ragouel
gotohscan 2.0_alpha-1 0 0.00 Search short sequences in large database sequences by computing all semi-global alignments RaumZeit
hisat2 2.2.0-1 1 0.00 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep
immix 1.3_2-2 1 0.00 Aligns and merges a set of similar images in order to decrease their noise stativ
instant-meshes-git r46.7b31608-1 3 0.00 Interactive field-aligned mesh generator henry0w
intertext-editor 1.6-1 0 0.00 Editor for aligned parallel texts gillux
jalview 2.11.0-2 11 0.00 Bioinformatics Multiple Alignment Editor orphan
kalign 2.0.4-2 0 0.00 A fast and accurate multiple sequence alignment algorithm designed to align large numbers of sequences orphan
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01
mafft 7.453-1 12 0.00 Multiple alignment program for amino acid or nucleotide sequences boenki
mgiza 3.0-1 0 0.00 Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models panosk
minimap2 2.17-1 0 0.00 A versatile pairwise aligner for genomic and spliced nucleotide sequences Ghabry
minimap2-bin 2.17-1 0 0.00 Aligner for genomic and spliced nucleotide sequences Chocobo1
minimap2-git 2.17.r46.gc9874e2-1 0 0.00 Aligner for genomic and spliced nucleotide sequences Chocobo1
msaprobs 0.9.7-1 0 0.00 Multiple sequence alignment generator orphan
mummer 3.23-2 5 0.00 MUMmer is a program for rapidly aligning large genomes orphan
mummer64 3.23-1 0 0.00 MUMmer is a program for rapidly aligning large genomes. This is a 64-bit build with some fixes. benwbooth
ngmlr 0.2.7-1 0 0.00 Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes tmiller
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. apolih
ngs-python 2.10.0-1 0 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. gamanakis
perl-text-aligner 0.16-1 2 0.00 Perl CPAN Text::Aligner - Align text in columns severach
pfam 31.0-1 0 0.00 The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). anadon
pftools 2.3-3 0 0.00 Contains all the software necessary to build protein and DNA generalized profiles and use them to scan and align sequences, and search databases. anadon
python-astroalign 1.0.3-00 0 0.00 Astrometric Alignment of Images Arcturus
python-face-alignment 1.0.0-1 0 0.00 Detect facial landmarks from Python using an accurate face alignment network egore911
python-fastdtw 0.3.2-1 0 0.00 Python implementation of FastDTW, whis is an approximate Dynamic Time Warping (DTW) algorithm that provides optimal or near-optimal alignments with an O(N) time and memory complexity. conrad784
python-tweakwcs 0.6.4-1 0 0.00 A package for correcting alignment errors in WCS objects Universebenzene
python2-bxpython 0.7.3-1 0 0.00 Tools for manipulating biological data, particularly multiple sequence alignments decryptedepsilon
r-genomicalignments 1.24.0-1 0 0.00 Representation and manipulation of short genomic alignments greyltc
r-rsamtools 2.4.0-1 0 0.00 Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import greyltc
salmon 0.13.1-1 0 0.00 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments orphan
seaview 4.7-2 10 0.00 GUI for multiple sequence alignment and molecular phylogeny boenki
segemehl v0.2-1 0 0.00 A sequence aligner based on short read mapping with gaps nigeil

77 packages found. Page 1 of 2.

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