python-pysam
|
0.22.0-1 |
12 |
0.87
|
Python interface for the SAM/BAM sequence alignment and mapping format |
oldherl
|
2024-04-16 07:41 (UTC) |
python-spacy-alignments
|
0.9.1-1 |
2 |
0.14
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |
lzsa
|
1.4.1-1 |
1 |
0.02
|
Byte-aligned, efficient lossless packer for fast decompression on 8-bit micros |
FredBezies
|
2023-10-11 10:26 (UTC) |
r-speaq
|
2.7.0-6 |
1 |
0.00
|
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
BioArchLinuxBot
|
2022-11-26 15:40 (UTC) |
uber-apk-signer-bin
|
1.3.0-1 |
3 |
0.00
|
A cli tool that helps signing and zip aligning APKs with certificates. |
bet4it
|
2023-02-23 22:23 (UTC) |
bwa-mem2
|
2.2.1-1 |
1 |
0.00
|
The next version of Burrows-Wheeler Aligner MEM algorithm |
vejnar
|
2023-05-17 01:02 (UTC) |
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
hisat2
|
2.2.1-1 |
2 |
0.00
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
bwa
|
0.7.17-2 |
11 |
0.00
|
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
Piezo
|
2022-02-01 17:44 (UTC) |
bowtie2
|
2.5.3-1 |
16 |
0.00
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. |
vejnar
|
2024-03-16 15:40 (UTC) |
diamond
|
2.1.9-1 |
3 |
0.00
|
High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x |
BioArchLinuxBot
|
2024-01-31 18:09 (UTC) |
last-align
|
1542-1 |
1 |
0.00
|
Genome-scale comparison of biological sequences |
luscinius
|
2024-02-20 05:39 (UTC) |
instant-meshes-git
|
r46.7b31608-1 |
5 |
0.00
|
Interactive field-aligned mesh generator |
eclairevoyant
|
2020-06-07 02:27 (UTC) |
python-face-alignment
|
1.4.1-1 |
2 |
0.00
|
Detect facial landmarks from Python using an accurate face alignment network |
orphan
|
2023-09-17 21:52 (UTC) |
xrandr-multihead-bottom-git
|
r2.ee61e56-1 |
0 |
0.00
|
Align a bunch of screens to the bottom edge left to right via a xrandr call. |
hrehfeld
|
2020-04-13 19:24 (UTC) |
wfa2-lib
|
2.3.5-1 |
0 |
0.00
|
Wavefront alignment algorithm library v2 |
BioArchLinuxBot
|
2024-04-20 12:01 (UTC) |
vim-tabular-git
|
1.0.0.r1.g00e1e7f-1 |
4 |
0.00
|
Vim script for text filtering and alignment |
dlin
|
2018-05-18 16:51 (UTC) |
vim-stabs
|
1.2-1 |
0 |
0.00
|
A vim plugin to use tabs for indentation and spaces for alignment |
vali
|
2021-11-12 10:52 (UTC) |
vim-easy-align-git
|
2.10.0+20.g12dd631697-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 22:03 (UTC) |
vim-easy-align
|
2.10.0-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 21:53 (UTC) |
vim-align
|
37.43-6 |
0 |
0.00
|
Lets you align lines using regular expressions |
orphan
|
2024-03-19 21:55 (UTC) |
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |
tracy-bin
|
0.6.1-1 |
0 |
0.00
|
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files |
malacology
|
2021-11-19 02:04 (UTC) |
tmtools
|
20170708-1 |
1 |
0.00
|
TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix |
orphan
|
2018-01-31 15:44 (UTC) |
tigrfam
|
15.0-1 |
0 |
0.00
|
TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. |
anadon
|
2018-04-02 17:56 (UTC) |
tcoffee
|
13.46.0.919e8c6b-1 |
6 |
0.00
|
An alignment tool for Protein, DNA and RNA sequences |
mschu
|
2023-08-15 19:00 (UTC) |
subread
|
2.0.6-1 |
0 |
0.00
|
a general-purpose read aligner which can align both genomic DNA-seq and RNA-seq reads, https://doi.org/10.1093/nar/gkt214 |
kbipinkumar
|
2023-05-10 06:01 (UTC) |
stringtie
|
2.2.2-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-04-21 00:02 (UTC) |
star-seq-alignment
|
2.7.2a-1 |
0 |
0.00
|
An RNA-seq alignment suite, by Alexander Dobin |
nigeil
|
2019-08-19 15:50 (UTC) |
star-cshl
|
2.7.11b-1 |
6 |
0.00
|
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays |
vejnar
|
2024-03-07 23:50 (UTC) |
spaln
|
3.0.2-2 |
0 |
0.00
|
Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA |
kbipinkumar
|
2023-11-17 07:09 (UTC) |
snippy
|
4.6.0-2 |
0 |
0.00
|
Rapid haploid variant calling and core genome alignment. |
PumpkinCheshire
|
2021-07-02 08:59 (UTC) |
snap-dna-git
|
v0.15.r199.ea6690f-1 |
0 |
0.00
|
Scalable Nucleotide Alignment Program |
xihh
|
2016-10-09 03:11 (UTC) |
segemehl
|
v0.2-1 |
0 |
0.00
|
A sequence aligner based on short read mapping with gaps |
nigeil
|
2017-03-01 20:27 (UTC) |
samclip
|
0.4.0-1 |
0 |
0.00
|
Filter SAM file for soft and hard clipped alignments |
PumpkinCheshire
|
2021-07-24 09:20 (UTC) |
salmon
|
1.10.3-1 |
0 |
0.00
|
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments |
kbipinkumar
|
2024-03-16 00:06 (UTC) |
r-seqlogo
|
1.68.0-2 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-03-07 12:11 (UTC) |
r-scalign
|
1.12.0-4 |
0 |
0.00
|
An alignment and integration method for single cell genomics |
BioArchLinuxBot
|
2023-04-29 05:24 (UTC) |
r-rsamtools
|
2.18.0-1 |
0 |
0.00
|
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
greyltc
|
2023-11-02 10:59 (UTC) |
r-rprimer
|
1.6.0-3 |
0 |
0.00
|
Design Degenerate Oligos from a Multiple DNA Sequence Alignment |
pekkarr
|
2024-04-26 14:34 (UTC) |
r-roar
|
1.38.0-1 |
0 |
0.00
|
Identify differential APA usage from RNA-seq alignments |
BioArchLinuxBot
|
2023-10-27 09:10 (UTC) |
r-rhisat2
|
1.18.0-1 |
0 |
0.00
|
R Wrapper for HISAT2 Aligner |
BioArchLinuxBot
|
2023-10-28 13:58 (UTC) |
r-ompbam
|
1.6.0-3 |
0 |
0.00
|
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files |
pekkarr
|
2024-04-26 00:34 (UTC) |
r-odseq
|
1.30.0-1 |
0 |
0.00
|
Outlier detection in multiple sequence alignments |
BioArchLinuxBot
|
2023-10-26 03:39 (UTC) |
r-ncgtw
|
1.16.0-1 |
0 |
0.00
|
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection |
BioArchLinuxBot
|
2023-10-28 15:26 (UTC) |
r-muscle
|
3.44.0-1 |
0 |
0.00
|
Multiple Sequence Alignment with MUSCLE |
BioArchLinuxBot
|
2023-10-26 03:04 (UTC) |
r-msar
|
0.6.0-2 |
0 |
0.00
|
Multiple Sequence Alignment for R Shiny |
BioArchLinuxBot
|
2022-06-06 08:17 (UTC) |
r-msa
|
1.34.0-1 |
0 |
0.00
|
Multiple Sequence Alignment |
BioArchLinuxBot
|
2023-10-26 02:45 (UTC) |
r-lowmaca
|
1.28.0-3 |
0 |
0.00
|
Low frequency Mutation Analysis via Consensus Alignment |
BioArchLinuxBot
|
2024-02-15 18:05 (UTC) |