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Package Details: libsbml 5.19.5-1
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Git Clone URL: | https://aur.archlinux.org/libsbml.git (read-only, click to copy) |
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Package Base: | libsbml |
Description: | XML-based description language for computational models in systems biology |
Upstream URL: | https://github.com/sbmlteam/libsbml |
Licenses: | LGPL |
Submitter: | mschu |
Maintainer: | mschu |
Last Packager: | mschu |
Votes: | 5 |
Popularity: | 0.000000 |
First Submitted: | 2011-04-24 08:52 (UTC) |
Last Updated: | 2022-05-25 10:56 (UTC) |
Dependencies (12)
- libxml2 (libxml2-git)
- cmake (cmake-git) (make)
- java-environment (java-gcj-compat, jdk9, zulu-10-bin, jdk-devel, jdk6, jdk12-openj9-bin, zulu-12-bin, jdk12, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk8-openjdk-jetbrains, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jdk8-jetbrains, zulu-14-bin, jdk-bcl, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, jdk15-adoptopenjdk, liberica-jre-8-full-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jdk8-openjdk-shenandoah, zulu-16-bin, jdk7-j9-bin, jdk11-graalvm-ee-bin, jdk11-j9-bin, jdk16-adoptopenjdk, jdk11-openj9-bin, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, jdk12-openjdk, jdk13-openjdk, jdk14-openjdk, jdk15-openjdk, jdk16-openjdk, jdk-jetbrains, zulu-embedded-jdk, jdk-openj9, jdk11-msopenjdk-bin, jdk18-beta-temurin, zulu-13-bin, jdk8-arm, jdk11, jdk17-jetbrains, jdk-jetbrains-openjdk-xdg, jre-jetbrains, zulu-embedded-jdk11, amazon-corretto-17, amazon-corretto-18, jdk, jdk-lts, amazon-corretto-8, amazon-corretto-11, jdk-openjdk-xdg, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-18-bin, zulu-15-bin, jdk8-j9-bin, jdk7r1-j9-bin, liberica-jdk-11-bin, liberica-jdk-11-full-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, liberica-jre-11-full-bin, liberica-jdk-17-full-bin, liberica-jdk-full-bin, liberica-jdk-8-full-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jdk11-jetbrains-imfix, jdk-arm, jdk-temurin, jdk11-temurin, jdk17-temurin, jdk8-adoptopenjdk, java-openjdk-bin, jdk-microsoft-openjdk, jdk8, jdk18-openj9-bin, java-openjdk-loom-ea-bin, jdk8-dragonwell-bin, jdk11-dragonwell-bin, jdk17-dragonwell-bin, jdk8-openj9-bin, jdk-openj9-bin, java-openjdk-ea-bin, jdk17-jetbrains-imfix, jdk-openjdk, jdk11-openjdk, jdk17-openjdk, jdk8-openjdk) (make)
- perl (perl-git) (make)
- python (python38, python37, python3.7, nogil-python, python311, python39, python36) (make)
- ruby (make)
- swig (swig-git) (make)
- bzip2 (bzip2-git, bzip2-rustify-git, bzip2-with-lbzip2-symlinks) (optional)
- java-runtime (java-gcj-compat, jdk9, jre9, jdk-devel, jre10, jdk6, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jre8-openjdk-jetbrains, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, jre14, jdk8-jetbrains, zulu-14-bin, jdk-bcl, jre-bcl, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, jdk15-adoptopenjdk, liberica-jre-8-full-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jre8-openjdk-shenandoah, zulu-16-bin, jdk7-j9-bin, jdk11-graalvm-ee-bin, jdk11-j9-bin, jdk16-adoptopenjdk, jdk11-openj9-bin, zulu-jdk-fx-bin, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, jre12-openjdk, jre13-openjdk, jre14-openjdk, jre15-openjdk, jre16-openjdk, jdk-jetbrains, zulu-embedded-jdk, jre-openj9, jdk11-msopenjdk-bin, jdk18-beta-temurin, zulu-13-bin, jdk8-arm, jre11, jre17-jetbrains, jre-jetbrains-openjdk-xdg, jre-jetbrains, zulu-embedded-jdk11, amazon-corretto-17, amazon-corretto-18, jre, jre-lts, amazon-corretto-8, amazon-corretto-11, jre-openjdk-xdg, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-18-bin, zulu-15-bin, jdk8-j9-bin, jdk7r1-j9-bin, liberica-jdk-11-bin, liberica-jdk-11-full-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, liberica-jre-11-full-bin, liberica-jdk-17-full-bin, liberica-jdk-full-bin, liberica-jdk-8-full-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jre11-jetbrains-imfix, jdk-arm, jdk-temurin, jdk11-temurin, jdk17-temurin, jre8-adoptopenjdk, java-openjdk-bin, jdk-microsoft-openjdk, jre8, jdk8, jdk18-openj9-bin, java-openjdk-loom-ea-bin, jdk8-dragonwell-bin, jdk11-dragonwell-bin, jdk17-dragonwell-bin, jdk8-openj9-bin, jdk-openj9-bin, java-openjdk-ea-bin, zulu-jre-fx-bin, hmcl-zulu-bin, jre17-jetbrains-imfix, jre-openjdk, jre11-openjdk, jre17-openjdk, jre8-openjdk) (optional)
- perl (perl-git) (optional)
- python (python38, python37, python3.7, nogil-python, python311, python39, python36) (optional)
- ruby (optional)
Required by (3)
- libnuml
- morpheus-modeling
- python2-stochpy (optional)
Latest Comments
pbordron commented on 2022-01-12 14:57 (UTC) (edited on 2022-01-12 14:58 (UTC) by pbordron)
Thanx for the update.
I think it is possible to simplify the recipe by replacing all the
-DENABLE_*=ON
in build section by-DWITH_STABLE_PACKAGES=ON
. This way, new stable packages will be automatically build with next versions of libsbml.It is also possible to activate experimental packages by using
-DWITH_ALL_PACKAGES=ON
instead. Maybe it will be interesting to have alibsbml-experimental
like SBMLTeam provides for condapbordron commented on 2022-01-12 12:36 (UTC) (edited on 2022-01-12 12:36 (UTC) by pbordron)
I just saw that a pre-release version (5.19.2) corrects the bug
https://github.com/sbmlteam/libsbml/releases/tag/v5.19.2
pbordron commented on 2022-01-12 11:03 (UTC)
Got this error with python-3.10
https://github.com/sbmlteam/libsbml/issues/173
Can be corrected with this patch:
https://github.com/sbmlteam/libsbml/commit/7843361b3fb6d13658928105e4635a01478ba70e
mschu commented on 2017-06-06 23:24 (UTC)
deeenes commented on 2017-06-06 08:45 (UTC)
mschu commented on 2017-06-03 17:09 (UTC)
vdubikhin commented on 2017-05-27 23:41 (UTC) (edited on 2017-05-28 01:42 (UTC) by vdubikhin)
jakobcreutzfeldt commented on 2014-06-13 09:40 (UTC)
mschu commented on 2013-03-20 17:02 (UTC)
mschu commented on 2013-03-11 20:36 (UTC)
Herk commented on 2013-03-11 20:31 (UTC)
mschu commented on 2013-02-04 10:05 (UTC)
menta commented on 2013-02-04 10:02 (UTC)
mschu commented on 2012-08-05 14:35 (UTC)
essenceoffoo commented on 2012-08-04 08:40 (UTC)