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Package Details: libsbml 5.19.7-1
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Git Clone URL: | https://aur.archlinux.org/libsbml.git (read-only, click to copy) |
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Package Base: | libsbml |
Description: | XML-based description language for computational models in systems biology |
Upstream URL: | https://github.com/sbmlteam/libsbml |
Licenses: | LGPL |
Submitter: | mschu |
Maintainer: | mschu |
Last Packager: | mschu |
Votes: | 5 |
Popularity: | 0.000000 |
First Submitted: | 2011-04-24 08:52 (UTC) |
Last Updated: | 2022-09-20 13:20 (UTC) |
Dependencies (12)
- libxml2 (libxml2-git)
- cmake (cmake-git) (make)
- java-environment (java-gcj-compat, zulu-10-bin, jdk12-openj9-bin, zulu-12-bin, jdk12, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, zulu-14-bin, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jdk8-openjdk-shenandoah, zulu-16-bin, jdk11-graalvm-ee-bin, jdk16-adoptopenjdk, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, jdk11-msopenjdk-bin, jdk18-beta-temurin, jdk8-arm, jdk17-jetbrains, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, jdk11-jetbrains-imfix, java-openjdk-loom-ea-bin, jdk17-dragonwell-bin, jdk7-j9-bin, jdk7r1-j9-bin, jdk8-j9-bin, jdk11-j9-bin, jdk-jetbrains, jdk11-jbr-xdg, jdk12-openjdk, jdk15-openjdk, jdk16-openjdk, jdk13-openjdk, jdk14-openjdk, jdk-bcl, amazon-corretto-18, zulu-18-bin, zulu-13-bin, bishengjdk-17, jdk-arm, jdk11-openj9-bin, jdk-openj9-bin, jdk-openj9, jabba-bin, zulu-15-bin, zulu-embedded-jdk, jdk-jbr-xdg, jdk-openjdk-xdg, jdk-openjdk-xdg-bin, zulu-embedded-jdk11, jdk-microsoft-openjdk, jdk18-openjdk, jdk17-openj9-bin, jdk11-jetbrains-bin, liberica-jdk-8-full-bin, jdk8-dragonwell-extended-bin, jdk8-dragonwell-standard-bin, jdk11-dragonwell-extended-bin, jdk11-dragonwell-standard-bin, jdk17-dragonwell-standard-bin, jdk8-dragonwell-extended, jdk18-openj9-bin, jdk8-openj9-bin, jdk8, jdk11, jdk-android-studio, amazon-corretto-8, amazon-corretto-11, amazon-corretto-19-bin, amazon-corretto-17, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-19-bin, jdk11-temurin, jdk17-temurin, jdk-temurin, jdk17-graalvm-ee-bin, java-openjdk-bin, liberica-jre-8-full-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jdk19-graalvm-bin, liberica-jdk-full-bin, jdk8-adoptopenjdk, jdk17-jetbrains-imfix, jdk17-jetbrains-bin, java-openjdk-ea-bin, jdk-lts, jdk, liberica-jdk-11-full-bin, jre-jetbrains, liberica-jdk-17-full-bin, liberica-jre-11-full-bin, jdk-openjdk, jdk11-openjdk, jdk17-openjdk, jdk8-openjdk) (make)
- perl (perl-git) (make)
- python (nogil-python, python36, python32, python311, python39, python38, python37, python312) (make)
- ruby (make)
- swig (swig-git) (make)
- bzip2 (bzip2-git, bzip2-rustify-git, bzip2-with-lbzip2-symlinks) (optional)
- java-runtime (java-gcj-compat, jre10, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, zulu-14-bin, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jre8-openjdk-shenandoah, zulu-16-bin, jdk11-graalvm-ee-bin, jdk16-adoptopenjdk, zulu-jdk-fx-bin, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, jdk11-msopenjdk-bin, jdk18-beta-temurin, jdk8-arm, jre17-jetbrains, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, jre11-jetbrains-imfix, java-openjdk-loom-ea-bin, jdk17-dragonwell-bin, hmcl-zulu-bin, jdk7-j9-bin, jdk7r1-j9-bin, jdk8-j9-bin, jdk11-j9-bin, jdk-jetbrains, jre11-jbr-xdg, jre12-openjdk, jre15-openjdk, jre16-openjdk, jre13-openjdk, jre14-openjdk, jre-bcl, jdk-bcl, amazon-corretto-18, zulu-18-bin, zulu-13-bin, jre15, jre14, jre13, jre16, jre17, bishengjdk-17, bishengjre-17, jdk-arm, jdk11-openj9-bin, jdk-openj9-bin, jre-openj9, zulu-15-bin, zulu-embedded-jdk, jre-jbr-xdg, jre-openjdk-xdg, jre-openjdk-xdg-bin, zulu-embedded-jdk11, jdk-microsoft-openjdk, jre18-openjdk, jdk17-openj9-bin, jdk11-jetbrains-bin, liberica-jdk-8-full-bin, zulu-jre-fx-bin, jdk8-dragonwell-extended-bin, jdk8-dragonwell-standard-bin, jdk11-dragonwell-extended-bin, jdk11-dragonwell-standard-bin, jdk17-dragonwell-standard-bin, jdk8-dragonwell-extended, jdk18-openj9-bin, jdk8-openj9-bin, jre8, jdk8, jre11, jdk-android-studio, amazon-corretto-8, amazon-corretto-11, amazon-corretto-19-bin, amazon-corretto-17, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-19-bin, jdk11-temurin, jdk17-temurin, jdk-temurin, jdk17-graalvm-ee-bin, java-openjdk-bin, liberica-jre-8-full-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jdk19-graalvm-bin, liberica-jdk-full-bin, jre8-adoptopenjdk, jre17-jetbrains-imfix, jdk17-jetbrains-bin, java-openjdk-ea-bin, jre-lts, jre, liberica-jdk-11-full-bin, jre-jetbrains, liberica-jdk-17-full-bin, liberica-jre-11-full-bin, jre-openjdk, jre11-openjdk, jre17-openjdk, jre8-openjdk) (optional)
- perl (perl-git) (optional)
- python (nogil-python, python36, python32, python311, python39, python38, python37, python312) (optional)
- ruby (optional)
Latest Comments
1 2 Next › Last »
pbordron commented on 2022-05-28 21:59 (UTC)
Got an error when installing the version 5.19..5
I think it is related with this issue -> https://github.com/sbmlteam/libsbml/issues/219
I did a quick in the
package
part by removing problematic files.please, could you update the
build
part using-DWITH_STABLE_PACKAGES=ON
option instead of the individual-DENABLE_
options?pbordron commented on 2022-01-12 14:57 (UTC) (edited on 2022-01-12 14:58 (UTC) by pbordron)
Thanx for the update.
I think it is possible to simplify the recipe by replacing all the
-DENABLE_*=ON
in build section by-DWITH_STABLE_PACKAGES=ON
. This way, new stable packages will be automatically build with next versions of libsbml.It is also possible to activate experimental packages by using
-DWITH_ALL_PACKAGES=ON
instead. Maybe it will be interesting to have alibsbml-experimental
like SBMLTeam provides for condapbordron commented on 2022-01-12 12:36 (UTC) (edited on 2022-01-12 12:36 (UTC) by pbordron)
I just saw that a pre-release version (5.19.2) corrects the bug
https://github.com/sbmlteam/libsbml/releases/tag/v5.19.2
pbordron commented on 2022-01-12 11:03 (UTC)
Got this error with python-3.10
https://github.com/sbmlteam/libsbml/issues/173
Can be corrected with this patch:
https://github.com/sbmlteam/libsbml/commit/7843361b3fb6d13658928105e4635a01478ba70e
mschu commented on 2017-06-06 23:24 (UTC)
deeenes commented on 2017-06-06 08:45 (UTC)
mschu commented on 2017-06-03 17:09 (UTC)
vdubikhin commented on 2017-05-27 23:41 (UTC) (edited on 2017-05-28 01:42 (UTC) by vdubikhin)
jakobcreutzfeldt commented on 2014-06-13 09:40 (UTC)
mschu commented on 2013-03-20 17:02 (UTC)
1 2 Next › Last »