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Package Details: sra-tools 3.0.3-3
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Git Clone URL: | https://aur.archlinux.org/sra-tools.git (read-only, click to copy) |
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Package Base: | sra-tools |
Description: | A collection of tools and libraries for using data in the INSDC Sequence Read Archives |
Upstream URL: | https://github.com/ncbi/sra-tools |
Keywords: | insdc ncbi |
Licenses: | custom: public domain |
Provides: | ncbi-vdb |
Submitter: | apolih |
Maintainer: | kbipinkumar (gamanakis, BioArchLinuxBot) |
Last Packager: | BioArchLinuxBot |
Votes: | 3 |
Popularity: | 0.000000 |
First Submitted: | 2016-01-29 22:50 (UTC) |
Last Updated: | 2023-01-06 12:08 (UTC) |
Dependencies (7)
- hdf5 (hdf5-git, hdf5-openmpi)
- libxml2 (libxml2-git)
- mbedtls (aur-mbedtls, mbedtls-git)
- python (nogil-python, python36, python32, python39, python38, python37, python311, python312)
- cmake (cmake-git) (make)
- doxygen (doxygen-git, doxygen-clang) (make)
- java-runtime (java-gcj-compat, jre10, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, zulu-14-bin, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jre8-openjdk-shenandoah, zulu-16-bin, jdk16-adoptopenjdk, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, jdk11-msopenjdk-bin, jdk18-beta-temurin, jdk8-arm, jre17-jetbrains, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, jre11-jetbrains-imfix, java-openjdk-loom-ea-bin, jdk17-dragonwell-bin, hmcl-zulu-bin, jdk7-j9-bin, jdk7r1-j9-bin, jdk8-j9-bin, jdk11-j9-bin, jdk-jetbrains, jre11-jbr-xdg, jre12-openjdk, jre15-openjdk, jre16-openjdk, jre13-openjdk, jre14-openjdk, jre-bcl, jdk-bcl, amazon-corretto-18, zulu-18-bin, zulu-13-bin, jre15, jre14, jre13, jre16, jre17, bishengjdk-17, bishengjre-17, jdk-arm, jdk11-openj9-bin, jdk-openj9-bin, jre-openj9, zulu-15-bin, jre-jbr-xdg, zulu-embedded-jdk11, jdk-microsoft-openjdk, jre18-openjdk, jdk17-openj9-bin, jdk8-dragonwell-extended, jdk18-openj9-bin, jdk8-openj9-bin, jre8, jdk8, jre11, jdk-android-studio, amazon-corretto-8, amazon-corretto-11, amazon-corretto-19-bin, amazon-corretto-17, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-19-bin, liberica-jre-8-full-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jdk19-graalvm-bin, liberica-jdk-full-bin, jre8-adoptopenjdk, jre17-jetbrains-imfix, jre-lts, jre, liberica-jdk-11-full-bin, liberica-jdk-17-full-bin, liberica-jre-11-full-bin, jdk8-dragonwell-extended-bin, jdk8-dragonwell-standard-bin, jdk11-dragonwell-extended-bin, jdk11-dragonwell-standard-bin, jdk11-graalvm-ee-bin, jdk8-graalvm-ee-bin, jdk19-graalvm-ee-bin, jdk13-openjdk-bin, zulu-jre-fx-bin, zulu-jdk-fx-bin, liberica-jdk-8-full-bin, jdk17-graalvm-ee-bin, zulu-embedded-jdk, jre-jetbrains, jdk-temurin, jdk17-temurin, jdk11-temurin, jdk17-dragonwell-standard-bin, jre-openjdk-xdg, jre-openjdk-xdg-bin, mandrel-bin, java-openjdk-ea-bin, java-openjdk-bin, jdk17-jetbrains-bin, jdk11-jetbrains-bin, zulu-20-bin, jre-openjdk, jre11-openjdk, jre17-openjdk, jre8-openjdk) (make)
Latest Comments
pdimens commented on 2019-07-05 13:27 (UTC)
Error: Failed to commit transaction: failed retrieving file 'perl-file-copy-recursive-0.44-2-any.pkg.tar.xz' from ct.mirror.garr.it : Connection timed out after 30000 milliseconds
Galaxy commented on 2019-05-29 07:35 (UTC)
'/usr/bin/kget -> kget.2' is conflicted with Extra/kget at <https://www.archlinux.org/packages/extra/x86_64/kget/>.
Would you rename the one in sra-tools ?
mollitz commented on 2018-12-19 15:27 (UTC)
pkgbuild fails because the installer is not capable of accessing https:
Running 43 test cases...
*** No errors detected ++++++++++++++++++++++++++++++++++++++++++++++++++++++ Run /tmp/trizen-moritz/ncbi-vdb/src/build_dir/ncbi-vdb/linux/gcc/x86_64/rel/test-bin/test-ngs_sra Running 67 test cases... 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2018-12-19T15:20:16 test-ngs_sra.1.0.0 int: file not open while identifying file within network system module - cannot KSocketGetRemoteEndpoint 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing unknown IP from '10.5.117.40' 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (130.14.250.27) from '10.5.117.40' 2018-12-19T15:20:16 test-ngs_sra.1.0.0 err: connection failed while opening file within cryptographic module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/000000/SRR000001' /tmp/trizen-moritz/ncbi-vdb/src/ncbi-vdb-2.9.3/test/ngs/ngstest_sra.cpp(97): last checkpoint before exception "NGS_ReadCollectionMake(SRR000001) failed" ...
pwl commented on 2016-11-18 08:27 (UTC)
apolih commented on 2016-11-17 17:30 (UTC)
apolih commented on 2016-11-17 17:25 (UTC)
pwl commented on 2016-11-17 15:08 (UTC)
pwl commented on 2016-11-17 15:01 (UTC)
pwl commented on 2016-11-17 14:51 (UTC) (edited on 2016-11-17 14:56 (UTC) by pwl)
pwl commented on 2016-11-17 13:55 (UTC)