Package Details: ugene-git 38.1.r485.g113d9908d0-1

Git Clone URL: https://aur.archlinux.org/ugene-git.git (read-only, click to copy)
Package Base: ugene-git
Description: A free cross-platform genome analysis suite.
Upstream URL: http://ugene.unipro.ru/
Licenses: GPL
Conflicts: ugene, ugene-bin
Provides: ugene, ugene-bin
Submitter: WFCody
Maintainer: WFCody
Last Packager: WFCody
Votes: 2
Popularity: 0.000000
First Submitted: 2018-11-09 08:24 (UTC)
Last Updated: 2021-12-14 04:30 (UTC)

Latest Comments

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WFCody commented on 2021-08-13 16:55 (UTC) (edited on 2021-08-13 16:56 (UTC) by WFCody)

The modification is very simple (I think). Just opencl-headers to depends() and OPENCL_INC_PATH=/usr/include/CL UGENE_OPENCL_DETECTED=1 as extra qmake arguments.

I am test-compiling with those modifications right now and I see that it picked up on those arguments during the build, so I think it worked.

Rhinoceros commented on 2021-08-13 16:10 (UTC)

Yeah, that might be a good option. It might get a bit lost though. An alternative could be to make a second package, e.g. ugene-opencl-git or similar.

WFCody commented on 2021-08-13 15:32 (UTC)

I am considering whether I should make an optional setting in the PKGBUILD to build UGene with OpenCL enabled...

Rhinoceros commented on 2021-08-13 15:19 (UTC)

Hmmm, I had a closer look, and I think upstream have created branches for 39.0 and 39.1. I think master contains all the code from those branches, but that's why git describe isn't picking up those tags. A bit annoying, but I'm not sure what you can do about it in an automated way.

WFCody commented on 2021-08-13 10:09 (UTC)

Yes I have also noticed that the git package names do not correspond to release versions. This one is however following master git so it should be the latest possible.

Rhinoceros commented on 2021-07-19 13:51 (UTC)

I just made this package. For some reason pkgver is 38.1.r271.gff2fb9afe8-1, even though the latest tagged version is 39.0.

WFCody commented on 2021-05-14 04:29 (UTC)

I just got a package deletion request for ugene-git arguing that it is the same as ugene-bin which is of course not true. This is built from source.

Right now very busy but will update this package to include all the individual (from source) packages in ugene-external-tools as optdepends since the metapackage has been removed.

nmruser commented on 2020-01-21 14:53 (UTC)

Cannot compile: Got the following error message:

src/client/linux/handler/exception_handler.cc:109:12: error: ‘int tgkill(pid_t, pid_t, int)’ was declared ‘extern’ and later ‘static’ [-fpermissive] 109 | static int tgkill(pid_t tgid, pid_t tid, int sig) { | ^~~~~~ In file included from /usr/include/signal.h:374, from src/client/linux/handler/exception_handler.h:33, from src/client/linux/handler/exception_handler.cc:66: /usr/include/bits/signal_ext.h:29:12: note: previous declaration of ‘int tgkill(__pid_t, __pid_t, int)’ 29 | extern int tgkill (__pid_t __tgid, __pid_t __tid, int __signal); | ^~~~~~

snowball commented on 2019-08-09 06:33 (UTC)

Also depends on qt5-websockets

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