bowtie2
|
2.5.3-1 |
16 |
0.00
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. |
vejnar
|
2024-03-16 15:40 (UTC) |
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
python-pysam
|
0.22.0-1 |
12 |
0.65
|
Python interface for the SAM/BAM sequence alignment and mapping format |
oldherl
|
2024-04-16 07:41 (UTC) |
clustal-omega
|
1.2.4-1 |
12 |
0.00
|
Protein sequence alignment program |
Rhinoceros
|
2017-01-19 12:07 (UTC) |
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
jalview
|
2.11.2.0-2 |
11 |
0.00
|
Bioinformatics Multiple Alignment Editor |
orphan
|
2022-03-25 07:22 (UTC) |
bwa
|
0.7.17-2 |
11 |
0.00
|
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
Piezo
|
2022-02-01 17:44 (UTC) |
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
tcoffee
|
13.46.0.919e8c6b-1 |
6 |
0.00
|
An alignment tool for Protein, DNA and RNA sequences |
mschu
|
2023-08-15 19:00 (UTC) |
star-cshl
|
2.7.11b-1 |
6 |
0.00
|
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays |
vejnar
|
2024-03-07 23:50 (UTC) |
mummer
|
4.0.0rc1-2 |
5 |
0.00
|
MUMmer is a program for rapidly aligning large genomes |
sukanka
|
2022-06-27 11:12 (UTC) |
instant-meshes-git
|
r46.7b31608-1 |
5 |
0.00
|
Interactive field-aligned mesh generator |
eclairevoyant
|
2020-06-07 02:27 (UTC) |
vim-tabular-git
|
1.0.0.r1.g00e1e7f-1 |
4 |
0.00
|
Vim script for text filtering and alignment |
dlin
|
2018-05-18 16:51 (UTC) |
clustalw
|
2.1-4 |
4 |
0.00
|
Clustal W multiple sequence alignment program, version 2.0 |
RaumZeit
|
2021-06-04 16:05 (UTC) |
uber-apk-signer-bin
|
1.3.0-1 |
3 |
0.00
|
A cli tool that helps signing and zip aligning APKs with certificates. |
bet4it
|
2023-02-23 22:23 (UTC) |
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |
hisat2
|
2.2.1-1 |
3 |
0.87
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
gmap-gsnap
|
2019.03.15-1 |
3 |
0.00
|
A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program |
orphan
|
2019-04-22 21:12 (UTC) |
fasttree
|
2.1.11-1 |
3 |
0.00
|
Approximately-Maximum-Likelihood Trees for Large Alignments |
semi
|
2019-09-20 19:21 (UTC) |
diamond
|
2.1.9-1 |
3 |
0.00
|
High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x |
BioArchLinuxBot
|
2024-01-31 18:09 (UTC) |
clustalx
|
2.1-6 |
3 |
0.00
|
Multiple alignment of nucleic acid and protein sequences |
RaumZeit
|
2021-06-04 16:09 (UTC) |
aliview-bin
|
1.27-1 |
3 |
0.00
|
Software for aligning viewing and editing dna/aminoacid sequences. |
iosonofabio
|
2021-05-15 23:53 (UTC) |
python-spacy-alignments
|
0.9.1-1 |
2 |
0.12
|
A spaCy package for the Rust tokenizations library |
jnphilipp
|
2023-09-25 12:25 (UTC) |
python-face-alignment
|
1.4.1-1 |
2 |
0.00
|
Detect facial landmarks from Python using an accurate face alignment network |
orphan
|
2023-09-17 21:52 (UTC) |
perl-text-aligner
|
0.16-1 |
2 |
0.00
|
Perl CPAN Text::Aligner - Align text in columns |
severach
|
2020-08-18 04:26 (UTC) |
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
locarna
|
1.9.2.2-1 |
2 |
0.00
|
Global and Local Alignment of RNAs |
RaumZeit
|
2019-06-23 16:00 (UTC) |
vim-align
|
37.43-6 |
1 |
0.87
|
Lets you align lines using regular expressions |
orphan
|
2024-03-19 21:55 (UTC) |
r-speaq
|
2.7.0-6 |
1 |
0.00
|
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations |
BioArchLinuxBot
|
2022-11-26 15:40 (UTC) |
python-tablign
|
0.3.7-1 |
1 |
0.00
|
Aligns columns in your ASCII tables |
orphan
|
2023-02-06 19:07 (UTC) |
python-ctc-segmentation-git
|
1.7.4-1 |
1 |
0.00
|
Determine and align utterance segments within audio files using CTC |
lumaku
|
2022-11-18 19:45 (UTC) |
neovim-lion-opt-git
|
56.75306ac-1 |
1 |
0.00
|
A simple alignment operator for (neo)vim. |
shanewstone
|
2020-04-30 01:19 (UTC) |
lzsa
|
1.4.1-1 |
1 |
0.02
|
Byte-aligned, efficient lossless packer for fast decompression on 8-bit micros |
FredBezies
|
2023-10-11 10:26 (UTC) |
last-align
|
1542-1 |
1 |
0.00
|
Genome-scale comparison of biological sequences |
luscinius
|
2024-02-20 05:39 (UTC) |
immix
|
1.3_2-2 |
1 |
0.00
|
Aligns and merges a set of similar images in order to decrease their noise |
stativ
|
2015-07-01 20:46 (UTC) |
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
dialign
|
2.2.1-3 |
1 |
0.00
|
Multiple sequence alignment program |
boenki
|
2015-07-06 15:16 (UTC) |
bwa-mem2-git
|
r183.d43752d-1 |
1 |
0.00
|
The next version of Burrows-Wheeler Aligner MEM algorithm |
Piezo
|
2020-08-23 16:23 (UTC) |
bwa-mem2
|
2.2.1-1 |
1 |
0.00
|
The next version of Burrows-Wheeler Aligner MEM algorithm |
vejnar
|
2023-05-17 01:02 (UTC) |
bwa-git
|
v0.7.17.r23.gfbfffc9-2 |
1 |
0.00
|
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
PumpkinCheshire
|
2021-05-09 11:47 (UTC) |
bbmap
|
39.06-3 |
1 |
0.00
|
A short read aligner and other bioinformatic tools |
malacology
|
2024-02-14 11:06 (UTC) |
aliview
|
1.28-3 |
1 |
0.87
|
Software for aligning viewing and editing dna/aminoacid sequences https://doi.org/10.1093/bioinformatics/btu531 |
malacology
|
2023-04-25 17:00 (UTC) |
xrandr-multihead-bottom-git
|
r2.ee61e56-1 |
0 |
0.00
|
Align a bunch of screens to the bottom edge left to right via a xrandr call. |
hrehfeld
|
2020-04-13 19:24 (UTC) |
wfa2-lib
|
2.3.5-1 |
0 |
0.00
|
Wavefront alignment algorithm library v2 |
BioArchLinuxBot
|
2024-04-20 12:01 (UTC) |
vim-stabs
|
1.2-1 |
0 |
0.00
|
A vim plugin to use tabs for indentation and spaces for alignment |
vali
|
2021-11-12 10:52 (UTC) |
vim-easy-align-git
|
2.10.0+20.g12dd631697-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 22:03 (UTC) |
vim-easy-align
|
2.10.0-1 |
0 |
0.00
|
Vim alignment plugin |
orphan
|
2020-04-18 21:53 (UTC) |
trimal
|
1.4.1-1 |
0 |
0.00
|
A tool for automated alignment trimming in large-scale phylogenetic analyses |
exyi
|
2023-11-17 17:33 (UTC) |
tracy-bin
|
0.6.1-1 |
0 |
0.00
|
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files |
malacology
|
2021-11-19 02:04 (UTC) |
tmtools
|
20170708-1 |
0 |
0.00
|
TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix |
orphan
|
2018-01-31 15:44 (UTC) |