128 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer Last Updated
bowtie2 2.5.3-1 16 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. vejnar 2024-03-16 15:40 (UTC)
mafft 7.526-1 14 0.00 Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 BioArchLinuxBot 2024-04-26 13:05 (UTC)
python-pysam 0.22.0-1 12 0.65 Python interface for the SAM/BAM sequence alignment and mapping format oldherl 2024-04-16 07:41 (UTC)
clustal-omega 1.2.4-1 12 0.00 Protein sequence alignment program Rhinoceros 2017-01-19 12:07 (UTC)
seaview 5.0.5-8 11 0.00 GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 malacology 2022-09-03 01:59 (UTC)
jalview 2.11.2.0-2 11 0.00 Bioinformatics Multiple Alignment Editor orphan 2022-03-25 07:22 (UTC)
bwa 0.7.17-2 11 0.00 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome Piezo 2022-02-01 17:44 (UTC)
bowtie 1.3.1-1 8 0.00 Alignment tool for short nucleotide sequences against long templates a821 2022-10-28 15:22 (UTC)
tcoffee 13.46.0.919e8c6b-1 6 0.00 An alignment tool for Protein, DNA and RNA sequences mschu 2023-08-15 19:00 (UTC)
star-cshl 2.7.11b-1 6 0.00 STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays vejnar 2024-03-07 23:50 (UTC)
mummer 4.0.0rc1-2 5 0.00 MUMmer is a program for rapidly aligning large genomes sukanka 2022-06-27 11:12 (UTC)
instant-meshes-git r46.7b31608-1 5 0.00 Interactive field-aligned mesh generator eclairevoyant 2020-06-07 02:27 (UTC)
vim-tabular-git 1.0.0.r1.g00e1e7f-1 4 0.00 Vim script for text filtering and alignment dlin 2018-05-18 16:51 (UTC)
clustalw 2.1-4 4 0.00 Clustal W multiple sequence alignment program, version 2.0 RaumZeit 2021-06-04 16:05 (UTC)
uber-apk-signer-bin 1.3.0-1 3 0.00 A cli tool that helps signing and zip aligning APKs with certificates. bet4it 2023-02-23 22:23 (UTC)
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01 2016-12-03 20:21 (UTC)
hisat2 2.2.1-1 3 0.87 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep 2020-10-21 14:45 (UTC)
gmap-gsnap 2019.03.15-1 3 0.00 A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program orphan 2019-04-22 21:12 (UTC)
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi 2019-09-20 19:21 (UTC)
diamond 2.1.9-1 3 0.00 High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x BioArchLinuxBot 2024-01-31 18:09 (UTC)
clustalx 2.1-6 3 0.00 Multiple alignment of nucleic acid and protein sequences RaumZeit 2021-06-04 16:09 (UTC)
aliview-bin 1.27-1 3 0.00 Software for aligning viewing and editing dna/aminoacid sequences. iosonofabio 2021-05-15 23:53 (UTC)
python-spacy-alignments 0.9.1-1 2 0.12 A spaCy package for the Rust tokenizations library jnphilipp 2023-09-25 12:25 (UTC)
python-face-alignment 1.4.1-1 2 0.00 Detect facial landmarks from Python using an accurate face alignment network orphan 2023-09-17 21:52 (UTC)
perl-text-aligner 0.16-1 2 0.00 Perl CPAN Text::Aligner - Align text in columns severach 2020-08-18 04:26 (UTC)
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. orphan 2019-08-25 03:20 (UTC)
locarna 1.9.2.2-1 2 0.00 Global and Local Alignment of RNAs RaumZeit 2019-06-23 16:00 (UTC)
vim-align 37.43-6 1 0.87 Lets you align lines using regular expressions orphan 2024-03-19 21:55 (UTC)
r-speaq 2.7.0-6 1 0.00 Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations BioArchLinuxBot 2022-11-26 15:40 (UTC)
python-tablign 0.3.7-1 1 0.00 Aligns columns in your ASCII tables orphan 2023-02-06 19:07 (UTC)
python-ctc-segmentation-git 1.7.4-1 1 0.00 Determine and align utterance segments within audio files using CTC lumaku 2022-11-18 19:45 (UTC)
neovim-lion-opt-git 56.75306ac-1 1 0.00 A simple alignment operator for (neo)vim. shanewstone 2020-04-30 01:19 (UTC)
lzsa 1.4.1-1 1 0.02 Byte-aligned, efficient lossless packer for fast decompression on 8-bit micros FredBezies 2023-10-11 10:26 (UTC)
last-align 1542-1 1 0.00 Genome-scale comparison of biological sequences luscinius 2024-02-20 05:39 (UTC)
immix 1.3_2-2 1 0.00 Aligns and merges a set of similar images in order to decrease their noise stativ 2015-07-01 20:46 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
dialign 2.2.1-3 1 0.00 Multiple sequence alignment program boenki 2015-07-06 15:16 (UTC)
bwa-mem2-git r183.d43752d-1 1 0.00 The next version of Burrows-Wheeler Aligner MEM algorithm Piezo 2020-08-23 16:23 (UTC)
bwa-mem2 2.2.1-1 1 0.00 The next version of Burrows-Wheeler Aligner MEM algorithm vejnar 2023-05-17 01:02 (UTC)
bwa-git v0.7.17.r23.gfbfffc9-2 1 0.00 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome PumpkinCheshire 2021-05-09 11:47 (UTC)
bbmap 39.06-3 1 0.00 A short read aligner and other bioinformatic tools malacology 2024-02-14 11:06 (UTC)
aliview 1.28-3 1 0.87 Software for aligning viewing and editing dna/aminoacid sequences https://doi.org/10.1093/bioinformatics/btu531 malacology 2023-04-25 17:00 (UTC)
xrandr-multihead-bottom-git r2.ee61e56-1 0 0.00 Align a bunch of screens to the bottom edge left to right via a xrandr call. hrehfeld 2020-04-13 19:24 (UTC)
wfa2-lib 2.3.5-1 0 0.00 Wavefront alignment algorithm library v2 BioArchLinuxBot 2024-04-20 12:01 (UTC)
vim-stabs 1.2-1 0 0.00 A vim plugin to use tabs for indentation and spaces for alignment vali 2021-11-12 10:52 (UTC)
vim-easy-align-git 2.10.0+20.g12dd631697-1 0 0.00 Vim alignment plugin orphan 2020-04-18 22:03 (UTC)
vim-easy-align 2.10.0-1 0 0.00 Vim alignment plugin orphan 2020-04-18 21:53 (UTC)
trimal 1.4.1-1 0 0.00 A tool for automated alignment trimming in large-scale phylogenetic analyses exyi 2023-11-17 17:33 (UTC)
tracy-bin 0.6.1-1 0 0.00 Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files malacology 2021-11-19 02:04 (UTC)
tmtools 20170708-1 0 0.00 TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix orphan 2018-01-31 15:44 (UTC)

128 packages found. Page 1 of 3.

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