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Package Details: r-mkl 4.4.1-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/r-mkl.git (read-only, click to copy)
Package Base:	r-mkl
Description:	Language and environment for statistical computing and graphics, linked to the Intel(R) MKL.
Upstream URL:	http://www.r-project.org/
Keywords:	hpc mathematics modelling r statistics
Licenses:	GPL
Conflicts:	microsoft-r-open, r
Provides:	r
Submitter:	giniu
Maintainer:	alexanderp
Last Packager:	alexanderp
Votes:	25
Popularity:	0.000295
First Submitted:	2010-05-06 00:10 (UTC)
Last Updated:	2024-07-04 19:34 (UTC)

Dependencies (28)

bzip2 (bzip2-git^AUR)
curl (curl-quiche-git^AUR, curl-http3-ngtcp2^AUR, curl-git^AUR, curl-c-ares^AUR)
icu (icu-git^AUR)
intel-oneapi-mkl (intel-oneapi-hpckit^AUR, intel-oneapi-basekit)
libjpeg (mozjpeg-git^AUR, libjpeg-turbo-git^AUR, mozjpeg^AUR, libjpeg-turbo)
libpng (libpng-apng^AUR, libpng-git^AUR)
libtiff (libtiff-git^AUR, libtiff-lerc^AUR)
libxmu
libxt
ncurses (ncurses-git^AUR)
openmp
pango (pango-git^AUR)
pcre2 (pcre2-git^AUR)
perl (perl-git^AUR)
readline (readline-git^AUR)
unzip (unzip-natspec^AUR, unzip-zstd^AUR)
which (busybox-coreutils^AUR)
xz (xz-git^AUR)
zip (zip-natspec^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat^AUR)
gcc-fortran (gcc-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-snapshot^AUR) (make)
jdk-openjdk (jdk16-adoptopenjdk^AUR, jdk-temurin^AUR, jdk21-temurin^AUR, jdk17-temurin^AUR, jdk11-temurin^AUR, zing-21-bin^AUR) (make)
texlive-fontsrecommended (texlive-installer^AUR, texlive-full^AUR) (make)
texlive-latexrecommended (texlive-installer^AUR, texlive-full^AUR) (make)
tk (tk-fossil^AUR) (make)
gcc-fortran (gcc-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-snapshot^AUR) (optional) – needed to compile some CRAN packages
texlive-latex (texlive-installer^AUR, texlive-full^AUR) (optional) – LaTeX sty files
tk (tk-fossil^AUR) (optional) – tcl-tk interface

Required by (3401)

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Sources (5)

Latest Comments

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AnRe005 commented on 2016-08-07 09:22 (UTC)

Maybe a little late but, -------------------------------------------------------------------------------------- The package compiles and runs well, however I can't install anything from within R, as there are always undefined symbols associated with intel compilers. For instance, if I try install.package("igraph"), the compilation runs well, but the package fails to load with: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/lib/R/library/igraph/libs/igraph.so': /usr/lib/R/library/igraph/libs/igraph.so: undefined symbol: for_cpstr -------------------------------------------------------------------------------------- **This error disappears when 'lifcore' is added to 'BLAS_LIBS' in the Makeconf file** -------------------------------------------------------------------------------------- Rcmdr fails with: unable to load shared object '/usr/lib/R/library/quantreg/libs/quantreg.so': /usr/lib/R/library/quantreg/libs/quantreg.so: undefined symbol: etime_ -------------------------------------------------------------------------------------- **This error disappears when 'lifport' is added to 'BLAS_LIBS' in the Makeconf file** So I was able to compile and install the 'igraph' package with icc. The 'quantreg' package still doesn't compile fine and throws the following error message: /opt/intel/composerxe/linux/compiler/lib/intel64/libifport.so.5: undefined symbol: __FFfrand

greenisagoodcolo commented on 2016-07-12 20:50 (UTC)

Thank you Lennartv. That was a big help :-D

AnRe005 commented on 2016-07-05 07:09 (UTC)

The md5sum and md512sum for r.png have changed. New md5sum: 8e0c51650b8a63f110fa7b09e699e9c4 New md512sum: 1491b01d3d14b86d26c383e00e2305858a52ddd498158c9f7f6b33026ee01f246408b1676cffea73f7783c8c4cf546285705c43c0286adbd75ad77706918b5fe

lennartv commented on 2016-06-25 19:49 (UTC) (edited on 2016-06-25 20:24 (UTC) by lennartv)

[SOLVED]: Following your solution proposal to compile packages where icc fails... My .R/Makevars is: CC=gcc CXX=g++ CXX1X=g++ CFLAGS=-mtune=native -g -O3 -Wall CXXFLAGS=-mtune=native -g -O3 -Wall ______________________________________ Installing "quantreg" I get: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/lennartv/R/x86_64-pc-linux-gnu-library/3.3/quantreg/libs/quantreg.so': /home/lennartv/R/x86_64-pc-linux-gnu-library/3.3/quantreg/libs/quantreg.so: undefined symbol: __must_be_linked_with_icc_or_xild Error: loading failed Thanks in advance for your help. I highly appreciate your package in general. ____________ Never mind. This solved the issue for me: CC=gcc CXX=g++ CXX1X=g++ CFLAGS=-mtune=native -g -O3 -Wall CPPFLAGS= CXXFLAGS=-mtune=native -g -O3 -Wall FC=gfortran FCFLAGS=-O3 -fopenmp F77=gfortran FFLAGS=-O3 -fopenmp

alexanderp commented on 2016-06-22 20:27 (UTC)

Hello wast3, yes, some packages fail to compile with icc. You can switch to gcc temporarily by creating a .R/Makevars file. Or, you can build the package with gcc.

wast3 commented on 2016-06-22 19:57 (UTC)

The package compiles and runs well, however I can't install anything from within R, as there are always undefined symbols associated with intel compilers. For instance, if I try install.package("igraph"), the compilation runs well, but the package fails to load with: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/lib/R/library/igraph/libs/igraph.so': /usr/lib/R/library/igraph/libs/igraph.so: undefined symbol: for_cpstr Rcmdr fails with: unable to load shared object '/usr/lib/R/library/quantreg/libs/quantreg.so': /usr/lib/R/library/quantreg/libs/quantreg.so: undefined symbol: etime_ Guess something must be missing either from this package or intel-mkl

chendaniely commented on 2016-06-19 03:34 (UTC)

I'm having a problem with the update (used pacaur and yaourt): ==> Extracting sources... -> Extracting R-3.3.0.tar.gz with bsdtar ==> Starting prepare()... ==> Starting build()... checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking whether ln -s works... yes checking for bison... bison -y checking for xiar... xiar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /usr/bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/bin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for firefox... /usr/bin/firefox using default browser ... /usr/bin/firefox checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... icc -std=c99 checking whether the C compiler works... no configure: error: in `/tmp/yaourt-tmp-dchen/aur-r-mkl/src/R-3.3.0': configure: error: C compiler cannot create executables

greenisagoodcolo commented on 2016-06-17 18:25 (UTC)

Thank you Alexanderp!

AnRe005 commented on 2016-06-17 11:28 (UTC)

Thanks for the fix. :-)