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Package Details: r-mkl 4.4.1-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/r-mkl.git (read-only, click to copy)
Package Base:	r-mkl
Description:	Language and environment for statistical computing and graphics, linked to the Intel(R) MKL.
Upstream URL:	http://www.r-project.org/
Keywords:	hpc mathematics modelling r statistics
Licenses:	GPL
Conflicts:	microsoft-r-open, r
Provides:	r
Submitter:	giniu
Maintainer:	alexanderp
Last Packager:	alexanderp
Votes:	25
Popularity:	0.000295
First Submitted:	2010-05-06 00:10 (UTC)
Last Updated:	2024-07-04 19:34 (UTC)

Dependencies (28)

bzip2 (bzip2-git^AUR)
curl (curl-quiche-git^AUR, curl-http3-ngtcp2^AUR, curl-git^AUR, curl-c-ares^AUR)
icu (icu-git^AUR)
intel-oneapi-mkl (intel-oneapi-hpckit^AUR, intel-oneapi-basekit)
libjpeg (mozjpeg-git^AUR, libjpeg-turbo-git^AUR, mozjpeg^AUR, libjpeg-turbo)
libpng (libpng-apng^AUR, libpng-git^AUR)
libtiff (libtiff-git^AUR, libtiff-lerc^AUR)
libxmu
libxt
ncurses (ncurses-git^AUR)
openmp
pango (pango-git^AUR)
pcre2 (pcre2-git^AUR)
perl (perl-git^AUR)
readline (readline-git^AUR)
unzip (unzip-natspec^AUR, unzip-zstd^AUR)
which (busybox-coreutils^AUR)
xz (xz-git^AUR)
zip (zip-natspec^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat^AUR)
gcc-fortran (gcc-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-snapshot^AUR) (make)
jdk-openjdk (jdk16-adoptopenjdk^AUR, jdk-temurin^AUR, jdk21-temurin^AUR, jdk17-temurin^AUR, jdk11-temurin^AUR, zing-21-bin^AUR) (make)
texlive-fontsrecommended (texlive-installer^AUR, texlive-full^AUR) (make)
texlive-latexrecommended (texlive-installer^AUR, texlive-full^AUR) (make)
tk (tk-fossil^AUR) (make)
gcc-fortran (gcc-fortran-git^AUR, gcc11-fortran^AUR, gcc-fortran-snapshot^AUR) (optional) – needed to compile some CRAN packages
texlive-latex (texlive-installer^AUR, texlive-full^AUR) (optional) – LaTeX sty files
tk (tk-fossil^AUR) (optional) – tcl-tk interface

Required by (3401)

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Sources (5)

Latest Comments

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alexanderp commented on 2016-06-17 09:28 (UTC) (edited on 2016-06-17 09:28 (UTC) by alexanderp)

I pushed another update to fix errors due to missing dependencies.

greenisagoodcolo commented on 2016-06-17 06:49 (UTC) (edited on 2016-06-17 06:58 (UTC) by greenisagoodcolo)

Manually installed intel-mkl from git/MAKEPKG instead of yaourt. Tried the same thing by cloning the repo and makepkg for r-mkl and running into this error. /home/matt/aur/r-mkl/r-mkl/PKGBUILD: line 87: /opt/intel/mkl/bin/mklvars.sh: No such file or directory So I manually installed intel-compiler, then ran into another error after once again trying makepkg for r-mkl. configure: error: in `/home/matt/aur/r-mkl/r-mkl/src/R-3.3.0': configure: error: C compiler cannot create executables See `config.log' for more details ==> ERROR: A failure occurred in build(). Aborting...

alexanderp commented on 2016-06-17 00:20 (UTC)

The latest update (3.3.0-2): - fixes compilation with icc/ifort - icc/ifort are enabled by default now - adds floating point precision options to icc - removes i686 build options You'll notice an error while checking the Matrix package. This is due to the LAPACK functions which error out on zero size matrices.

alexanderp commented on 2016-06-16 19:26 (UTC)

That was an error from Intel's side. Try again now. You won't be able to build intel-mkl with yaourt anyway. I suggest cloning the AUR repo locally and building with "$ makepkg -scCi"

greenisagoodcolo commented on 2016-06-16 19:16 (UTC)

Hello all, I've tried three times to install r-mkl with yaourt. I keep getting this error...any thoughts? Thank you. ==> Retrieving sources... -> Downloading parallel_studio_xe_2016_update3.tgz... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 97 4030M 97 3937M 0 0 3239k 0 0:21:14 0:20:44 0:00:30 4321k curl: (23) Failed writing body (872 != 10136) ==> ERROR: Failure while downloading http://registrationcenter-download.intel.com/akdlm/irc_nas/9061/parallel_studio_xe_2016_update3.tgz Aborting... ==> ERROR: Makepkg was unable to build intel-parallel-studio-xe.

AnRe005 commented on 2016-06-16 06:42 (UTC)

Thanks for your reply. Then I'll use the GCC compilers until this is fixed.

alexanderp commented on 2016-06-15 17:18 (UTC)

AnRe005, the latest changes to Intel Parallel Studio introduced some changes which have broken compilation with icc and ifort.

AnRe005 commented on 2016-06-15 14:57 (UTC)

Hey, I tried to compile the pkg with the intel compilers and added the -fp-model precise flag to the _intel_cc_opt=... line. The compilation fails with the message: checking whether ifort and icc agree on int and double... configure: WARNING: ifort and icc disagree on int and double configure: error: Maybe change CFLAGS or FFLAGS? What else do I have to adapt? Thanks in advance

alexanderp commented on 2016-06-03 11:21 (UTC)

No problem. Please keep us updated.

nacnudus commented on 2016-06-03 11:14 (UTC)

I think this is an R problem, since by running the test script mgcv-Ex.R with R version 3.2.4 (binary install), it encountered the same error in line 1940: cl <- makeCluster(nc) A workaround is to change the PKGBUILD to do `make check` instead of `make check-recommended`, to avoid this check altogether. I'll follow this up with the R maintainers.